Browse Element(s) Details


Os.38103.1.S1_at

Description gb:AK059018.1
DB_XREF= gi:32969036
TID=Os.38103.1
CNT=14
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.38103 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-021-B01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-021-B01, full insert sequence.
FL= gb:AK059018.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3775011/11guanine nucleotide exchange family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g37720Os.48016.1.S1_at7/117+22608407..22614233hypothetical protein
LOC_Os07g37730Os.44475.1.S1_at11/117+22617392..22619555Rotenone-insensitive NADH-ubiquinone oxidoreductase, mitochondrial precursor, putative, expressed
LOC_Os07g37730Os.44475.1.S1_x_at11/117+22617392..22619555Rotenone-insensitive NADH-ubiquinone oxidoreductase, mitochondrial precursor, putative, expressed
LOC_Os07g37730OsAffx.22555.1.S1_x_at3/117+22617392..22619555Rotenone-insensitive NADH-ubiquinone oxidoreductase, mitochondrial precursor, putative, expressed
LOC_Os07g37740Os.17886.1.S1_at9/117+22626002..22630563Secretory carrier-associated membrane protein, putative, expressed
LOC_Os07g37750Os.38103.1.S1_at11/117+22633066..22643973guanine nucleotide exchange family protein, putative, expressed
LOC_Os07g37760Os.53924.1.S1_at11/117+22646672..22652656lysine ketoglutarate reductase trans-splicing related 1, putative, expressed
LOC_Os07g37770Os.12042.1.S1_at8/117+22652964..2265489440S ribosomal protein S11, putative, expressed
LOC_Os07g37780Os.12042.1.S1_at9/117+22655551..2265748040S ribosomal protein S11, putative, expressed
LOC_Os07g37790Os.31773.2.S1_at10/117+22657868..22661984Cell differentiation protein rcd1, putative, expressed
LOC_Os07g37790Os.31773.2.S1_x_at10/117+22657868..22661984Cell differentiation protein rcd1, putative, expressed
LOC_Os07g37800Os.37917.1.S1_at10/117+22664414..22668455Bromodomain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005085molecular_functionguanyl-nucleotide exchange factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.38103.1.S1_at--211--5291Chr07:22633719..22633743 (25 bp)
GAATGTGTATCATGGACGCTCAGAT
LOC_Os07g37750
Os.38103.1.S1_at--660--3491Chr07:22633709..22633733 (25 bp)
CATGGACGCTCAGATATTCAAGAAG
LOC_Os07g37750
Os.38103.1.S1_at--1058--5111Chr07:22633685..22633709 (25 bp)
GCACATCAGAGAGTTCTATCCATTA
LOC_Os07g37750
Os.38103.1.S1_at--972--8811Chr07:22633481..22633505 (25 bp)
TGATTGTACCTCCTTCCGTTGCATA
LOC_Os07g37750
Os.38103.1.S1_at--44--3651Chr07:22633469..22633493 (25 bp)
CTTCCGTTGCATATATCTTCTCTTG
LOC_Os07g37750
Os.38103.1.S1_at--796--10811Chr07:22633418..22633442 (25 bp)
TTGTGCAAACATGGAGCGTCAGAAA
LOC_Os07g37750
Os.38103.1.S1_at--894--3631Chr07:22633267..22633291 (25 bp)
CTTGCCACTTTCGTTCTATGTATTA
LOC_Os07g37750
Os.38103.1.S1_at--491--5731Chr07:22633225..22633249 (25 bp)
GACTGGAACTATGCTTCTATACACA
LOC_Os07g37750
Os.38103.1.S1_at--1116--11Chr07:22633173..22633197 (25 bp)
ATTGGCTAGTGCTATGTATACATTG
LOC_Os07g37750
Os.38103.1.S1_at--269--3471Chr07:22633146..22633170 (25 bp)
CAGGATATTGTACTCGAGGCGTGTT
LOC_Os07g37750
Os.38103.1.S1_at--416--8351Chr07:22633129..22633153 (25 bp)
GGCGTGTTGTTATACGGCAATACTA
LOC_Os07g37750
Target Sequence 
GAATGTGTATCATGGACGCTCAGATATTCAAGAAGCACATCAGAGAGTTCTATCCATTAATTACAAAACTTATCTGCTGT
GATCAGATGGATGTTCGTGGTGCCNCNTGGTGACCTNTTTCAGCNAANCAACTTACCCCACTCATGCCCTGAGTTNTGAT
TGTACCTCCTTCCGTTGCATATATCTTCTCTTGTTGGAGTATATTCAGTATTAGCATTTTTGTGCAAACATGGAGCGTCA
GAAAGAAGCTTAACGCCCTTAAAGGCACACATCTGAGCTCGGTAGGCTGTAAATTGACAAGCTTAAGGTTTTTGCAGGTG
NTCTAAGTACGCAAGAAAATTAGCTTTGCATGTTGCGCATGAAATTTTTCCTTGCCACTTTCGTTCTATGTATTATTATT
NATCTATGCGGGGACTGGAACTATGCTTCTATACACAAGTAGAGGATTGAGGCGAGGGAATAGCATTGGCTAGTGCTATG
TATACATTGTTCAGGATATTGTACTCGAGGCGTGTTGTTATACGGCAATACTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.38103.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis