Browse Element(s) Details


Os.48016.1.S1_at

Description gb:NM_185833.1
DB_XREF= gi:34898751
GEN=OJ1720_F04.24
TID=Os.48016.1
CNT=8
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.48016 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein~similar to Arabidopsis thaliana chromosome5, At5g63690 (OJ1112_E08.11), mRNA
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein~similar to Arabidopsis thaliana chromosome5, At5g63690 (OJ1720_F04.24), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g377207/11hypothetical protein
LOC_Os07g377106/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g37670NANA7+22581259..22586123retrotransposon protein, putative, unclassified
LOC_Os07g37680Os.34868.1.S1_at11/117+22589212..22592946expressed protein
LOC_Os07g37680Os.14275.1.S1_at8/117+22589212..22592946expressed protein
LOC_Os07g37680OsAffx.14754.1.S1_at2/117+22589212..22592946expressed protein
LOC_Os07g37690Os.5606.1.S1_at11/117+22595962..22597649UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os07g37700Os.34120.1.S1_at3/117+22600371..22600601hypothetical protein
LOC_Os07g37710Os.48016.1.S1_at6/117+22606199..22606950hypothetical protein
LOC_Os07g37720Os.48016.1.S1_at7/117+22608407..22614233hypothetical protein
LOC_Os07g37730Os.44475.1.S1_at11/117+22617392..22619555Rotenone-insensitive NADH-ubiquinone oxidoreductase, mitochondrial precursor, putative, expressed
LOC_Os07g37730Os.44475.1.S1_x_at11/117+22617392..22619555Rotenone-insensitive NADH-ubiquinone oxidoreductase, mitochondrial precursor, putative, expressed
LOC_Os07g37730OsAffx.22555.1.S1_x_at3/117+22617392..22619555Rotenone-insensitive NADH-ubiquinone oxidoreductase, mitochondrial precursor, putative, expressed
LOC_Os07g37740Os.17886.1.S1_at9/117+22626002..22630563Secretory carrier-associated membrane protein, putative, expressed
LOC_Os07g37750Os.38103.1.S1_at11/117+22633066..22643973guanine nucleotide exchange family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.48016.1.S1_at--1090--1914Chr07:22613793..22613817 (25 bp)
ACGGTGAAGCTCAAAGACCTCGCCC
LOC_Os07g37720
Os.48016.1.S1_at--545--8334Chr07:22613819..22613843 (25 bp)
GGCGGCCACCAACAACGTGAACACG
LOC_Os07g37720
Os.48016.1.S1_at--670--4094Chr07:22613842..22613866 (25 bp)
CGACGTTCATCGTGCTCGACAAGGC
LOC_Os07g37720
Os.48016.1.S1_at--380--9994Chr07:22614036..22614060 (25 bp)
TACCACAGGAGCAACAGCCTCGTGC
LOC_Os07g37720
Os.48016.1.S1_at--706--7574Chr07:22614095..22614119 (25 bp)
GGGCGAGTTCACGATGCTGTTCGTC
LOC_Os07g37720
Os.48016.1.S1_at--832--9374Chr07:22614118..22614142 (25 bp)
TCGAGACGCCCAACATGAGCGAGGT
LOC_Os07g37720
Os.48016.1.S1_at--580--9051NONE
TGCAGTGACTGCCTGACTGACCAAC
NONE
Os.48016.1.S1_at--1162--5432Chr07:22614244..22614264 (21 bp)
GACTGACCAACCAACCTAAGGCCTG
NONE
Os.48016.1.S1_at--356--9771NONE
TAAGGCCTGGTTCTTCTGTCACTGA
NONE
Os.48016.1.S1_at--368--10351NONE
TTTTGGCTCCGGGAAAATTGCTCAA
NONE
Os.48016.1.S1_at--555--7412Chr07:22612254..22612278 (23 bp)
GTGATTAGCTCATAAACCTGCTTGA
LOC_Os07g37720
Target Sequence 
ACGGTGAAGCTCAAAGACCTCGCCCCGGCGGCCACCAACAACGTGAACACGACGTTCATCGTGCTCGACAAGGCGGCCAG
GGCGCCGCCGCCGCCGCCGCACGGCCGCGCCGACGCNAGGGAGGAGACGTGCCTGGCGCTCGTGGCCGACGAGACGGCGG
CGGCGCACTTCCTCCTGTGGGGCGCCGAGCGCGACGCGTTCGAGCCGGGCGACATCGTGCGGCTGACCGGCGGCATCTTC
TCCTACCACAGGAGCAACAGCCTCGTGCTGCGGGCCGGGCGGCGCGGCCGCGCCGAGAAGGTGGGCGAGTTCACGATGCT
GTTCGTCGAGACGCCCAACATGAGCGAGGTGAAGTGGGTGCGCGACCCCGGCGACCCCAGGAGGATGGTGCAGGAGGCCG
TCGTCTCGCCGCACTCTCAGGTCTTCAAGCCGCTGCAGTGACTGCCTGACTGACCAACCAACCTAAGGCCTGGTTCTTCT
GTCACTGAATTTTTGGCTCCGGGAAAATTGCTCAATTCGATTAAGTGTGATTAGCTCATAAACCTGCTTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.48016.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis