Browse Element(s) Details


Os.14275.1.S1_at

Description gb:BI805536
DB_XREF= gi:15852740
DB_XREF=S040F12
CLONE=S040F12
TID=Os.14275.1
CNT=1
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.14275 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g376808/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g37640Os.44676.1.S1_at11/117+22564063..22569813IKI3 family protein, putative, expressed
LOC_Os07g37650Os.11759.1.S1_at11/117+22570439..22576212GTPase activating protein, putative, expressed
LOC_Os07g37660OsAffx.22485.1.S1_x_at11/117+22578377..22578792hypothetical protein
LOC_Os07g37670NANA7+22581259..22586123retrotransposon protein, putative, unclassified
LOC_Os07g37680Os.34868.1.S1_at11/117+22589212..22592946expressed protein
LOC_Os07g37680Os.14275.1.S1_at8/117+22589212..22592946expressed protein
LOC_Os07g37680OsAffx.14754.1.S1_at2/117+22589212..22592946expressed protein
LOC_Os07g37690Os.5606.1.S1_at11/117+22595962..22597649UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os07g37700Os.34120.1.S1_at3/117+22600371..22600601hypothetical protein
LOC_Os07g37710Os.48016.1.S1_at6/117+22606199..22606950hypothetical protein
LOC_Os07g37720Os.48016.1.S1_at7/117+22608407..22614233hypothetical protein
LOC_Os07g37730Os.44475.1.S1_at11/117+22617392..22619555Rotenone-insensitive NADH-ubiquinone oxidoreductase, mitochondrial precursor, putative, expressed
LOC_Os07g37730Os.44475.1.S1_x_at11/117+22617392..22619555Rotenone-insensitive NADH-ubiquinone oxidoreductase, mitochondrial precursor, putative, expressed
LOC_Os07g37730OsAffx.22555.1.S1_x_at3/117+22617392..22619555Rotenone-insensitive NADH-ubiquinone oxidoreductase, mitochondrial precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14275.1.S1_at--691--8931Chr07:22589901..22589926 (25 bp)
TGACCCGCCAAGGTTCATTGAACAT
LOC_Os07g37680
Os.14275.1.S1_at--1089--2491Chr07:22589922..22589943 (22 bp)
AACATGCAAGTAGTGGTTCCAATCT
LOC_Os07g37680
Os.14275.1.S1_at--332--7911Chr07:22589936..22589961 (25 bp)
GGTTCCAATCTGTATATTGCACTTG
LOC_Os07g37680
Os.14275.1.S1_at--341--71Chr07:22589952..22589976 (25 bp)
ATTGCACTTGTCTTTGGATGCCTCT
LOC_Os07g37680
Os.14275.1.S1_at--615--7151Chr07:22589961..22589985 (25 bp)
GTCTTTGGATGCCTCTAGTCTAGAA
LOC_Os07g37680
Os.14275.1.S1_at--579--7151Chr07:22589978..22590002 (25 bp)
GTCTAGAAAGTTATGCTTGCTTTGT
LOC_Os07g37680
Os.14275.1.S1_at--680--3631Chr07:22589993..22590017 (25 bp)
CTTGCTTTGTGATTGATTTGTTTAT
LOC_Os07g37680
Os.14275.1.S1_at--1081--9791NONE
TAACTTTTGGCTCGTAGTACACCCT
NONE
Os.14275.1.S1_at--654--9391NONE
TCGTAGTACACCCTTCTGTGGTCAA
NONE
Os.14275.1.S1_at--895--4311NONE
CCTTCTGTGGTCAAGTGTCGTATAC
NONE
Os.14275.1.S1_at--784--7451Chr07:22590071..22590095 (25 bp)
GTGTCGTATACTTGTTTTGATTACT
LOC_Os07g37680
Target Sequence 
TGACCCGCCAAGGTTCATTGAACATGCAAGTAGTGGTTCCAATCTGTATATTGCACTTGTCTTTGGATGCCTCTAGTCTA
GAAAGTTATGCTTGCTTTGTGATTGATTTGTTTATATCAGATGACAATATACTTAACTTTTGGCTCGTAGTACACCCTTC
TGTGGTCAAGTGTCGTATACTTGTTTTGATTACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14275.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis