Browse Element(s) Details


Os.44676.1.S1_at

Description gb:AK121078.1
DB_XREF= gi:37990701
TID=Os.44676.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.44676 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative IkappaB kinase complex-associated protein (OJ1720_F04.13), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023062J19, full insert sequence.
FL= gb:AK121078.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3764011/11IKI3 family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g37610Os.46019.1.S1_at10/117+22533228..22541089B3 DNA binding domain containing protein, expressed
LOC_Os07g37620Os.32022.1.S1_at11/117+22541753..22543261Cotton fibre expressed protein, expressed
LOC_Os07g37620Os.32022.1.S1_x_at11/117+22541753..22543261Cotton fibre expressed protein, expressed
LOC_Os07g37630Os.46438.1.A1_s_at11/117+22558805..22563004transposon protein, putative, unclassified, expressed
LOC_Os07g37630Os.25640.1.S1_at11/117+22558805..22563004transposon protein, putative, unclassified, expressed
LOC_Os07g37640Os.44676.1.S1_at11/117+22564063..22569813IKI3 family protein, putative, expressed
LOC_Os07g37650Os.11759.1.S1_at11/117+22570439..22576212GTPase activating protein, putative, expressed
LOC_Os07g37660OsAffx.22485.1.S1_x_at11/117+22578377..22578792hypothetical protein
LOC_Os07g37670NANA7+22581259..22586123retrotransposon protein, putative, unclassified
LOC_Os07g37680Os.34868.1.S1_at11/117+22589212..22592946expressed protein
LOC_Os07g37680Os.14275.1.S1_at8/117+22589212..22592946expressed protein
LOC_Os07g37680OsAffx.14754.1.S1_at2/117+22589212..22592946expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0003711molecular_functiontranscriptional elongation regulator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.44676.1.S1_at--833--5951Chr07:22569130..22569154 (25 bp)
GAGAATGCACATACGCTTGAGAATT
LOC_Os07g37640
Os.44676.1.S1_at--283--7351Chr07:22569191..22569215 (25 bp)
GTGAAACCACCTGTTGGCGAATCAA
LOC_Os07g37640
Os.44676.1.S1_at--236--6231Chr07:22569431..22569455 (25 bp)
GAGGCCTCAACAATGATTGCCATAT
LOC_Os07g37640
Os.44676.1.S1_at--1017--3571Chr07:22569451..22569475 (25 bp)
CATATCATTCTGTGGCGGCTGTCAA
LOC_Os07g37640
Os.44676.1.S1_at--4--7691Chr07:22569476..22569500 (25 bp)
GGGTAACCCGGCTATATATCGATCG
LOC_Os07g37640
Os.44676.1.S1_at--600--251Chr07:22569491..22569515 (25 bp)
ATATCGATCGCAGCCAATTCAGGAT
LOC_Os07g37640
Os.44676.1.S1_at--1073--171Chr07:22569516..22569540 (25 bp)
ATTTATGGTGTTCTGCCACTTGGGT
LOC_Os07g37640
Os.44676.1.S1_at--898--3071Chr07:22569580..22569604 (25 bp)
AATCAGGATGTTGGAGGCCGCAGCC
LOC_Os07g37640
Os.44676.1.S1_at--737--1671Chr07:22569601..22569625 (25 bp)
AGCCGAGCCCGCTTGAGCTTTTTGC
LOC_Os07g37640
Os.44676.1.S1_at--870--3671Chr07:22569618..22569642 (25 bp)
CTTTTTGCTGCTTCCATTTGTGGTA
LOC_Os07g37640
Os.44676.1.S1_at--1127--2811Chr07:22569681..22569705 (25 bp)
AAGTTACATCATCTGTTCATCTGAA
LOC_Os07g37640
Target Sequence 
GAGAATGCACATACGCTTGAGAATTACGTGAAAATGCTGAGAGCTCATCAGTCAGCTGATAGTGAAACCACCTGTTGGCG
AATCAAAGCATTGTCGCCGCCTTGGACCGGGGTATACTCCAATTCACATGAGNNNGCTGAATGTTGATGAGTGGTAAGCA
GCGGTAACTGTTGGAATGGAATTGAACGAGAGGCCTCAACAATGATTGCCATATCATTCTGTGGCGGCTGTCAAGGGTAA
CCCGGCTATATATCGATCGCAGCCAATTCAGGATATTTATGGTGTTCTGCCACTTGGGTGGATTGTTACGTCAAAGTGGT
GAAACATTTTTGCTTATAAATCAGGATGTTGGAGGCCGCAGCCGAGCCCGCTTGAGCTTTTTGCTGCTTCCATTTGTGGT
ATAATTTTGATCGAGTAGTTATATGCATGGAGGAATAAAAAGTTACATCATCTGTTCATCTGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.44676.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis