Browse Element(s) Details


Os.25640.1.S1_at

Description gb:AK067575.1
DB_XREF= gi:32977593
TID=Os.25640.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.25640 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) contains ESTs AU063937(E2221),AU085882(E2221)~transposase-like protein (OJ1720_F04.12), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013110M05, full insert sequence.
FL= gb:AK067575.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3763011/11transposon protein, putative, unclassified, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g37610Os.46019.1.S1_at10/117+22533228..22541089B3 DNA binding domain containing protein, expressed
LOC_Os07g37620Os.32022.1.S1_at11/117+22541753..22543261Cotton fibre expressed protein, expressed
LOC_Os07g37620Os.32022.1.S1_x_at11/117+22541753..22543261Cotton fibre expressed protein, expressed
LOC_Os07g37630Os.46438.1.A1_s_at11/117+22558805..22563004transposon protein, putative, unclassified, expressed
LOC_Os07g37630Os.25640.1.S1_at11/117+22558805..22563004transposon protein, putative, unclassified, expressed
LOC_Os07g37640Os.44676.1.S1_at11/117+22564063..22569813IKI3 family protein, putative, expressed
LOC_Os07g37650Os.11759.1.S1_at11/117+22570439..22576212GTPase activating protein, putative, expressed
LOC_Os07g37660OsAffx.22485.1.S1_x_at11/117+22578377..22578792hypothetical protein
LOC_Os07g37670NANA7+22581259..22586123retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.25640.1.S1_at--161--10351Chr07:22562441..22562465 (25 bp)
TTATATATCACCAGAAAATTCCAGG
LOC_Os07g37630
Os.25640.1.S1_at--435--2411Chr07:22562455..22562479 (25 bp)
AAAATTCCAGGTTATGTCCCTCTGC
LOC_Os07g37630
Os.25640.1.S1_at--1064--3151Chr07:22562457..22562481 (25 bp)
AATTCCAGGTTATGTCCCTCTGCTG
LOC_Os07g37630
Os.25640.1.S1_at--171--10691Chr07:22562459..22562483 (25 bp)
TTCCAGGTTATGTCCCTCTGCTGAC
LOC_Os07g37630
Os.25640.1.S1_at--333--6791Chr07:22562465..22562489 (25 bp)
GTTATGTCCCTCTGCTGACCCACTT
LOC_Os07g37630
Os.25640.1.S1_at--310--4371Chr07:22562484..22562508 (25 bp)
CCACTTCCTCATCCAGGTGATTACA
LOC_Os07g37630
Os.25640.1.S1_at--67--2071Chr07:22562486..22562510 (25 bp)
ACTTCCTCATCCAGGTGATTACATG
LOC_Os07g37630
Os.25640.1.S1_at--787--10671Chr07:22562488..22562512 (25 bp)
TTCCTCATCCAGGTGATTACATGGT
LOC_Os07g37630
Os.25640.1.S1_at--284--3751Chr07:22562491..22562515 (25 bp)
CTCATCCAGGTGATTACATGGTAAT
LOC_Os07g37630
Os.25640.1.S1_at--884--7011Chr07:22562601..22562625 (25 bp)
GTACATGTAATTTTCAGATAAAGTT
LOC_Os07g37630
Os.25640.1.S1_at--514--8831Chr07:22562633..22562657 (25 bp)
TGATGAAAAGTTTCCATCGGTGTAT
LOC_Os07g37630
Target Sequence 
TTATATATCACCAGAAAATTCCAGGTTATGTCCCTCTGCTGACCCACTTCCTCATCCAGGTGATTACATGGTAATATTGT
GCATCTTGCTGGCTGGCAATTTGACAATGCTTACACATTATACCGTAGAGCTGAGAATAGTGATGGCTAGCCCATCCATT
GTACATGTAATTTTCAGATAAAGTTTAGAGAATGATGAAAAGTTTCCATCGGTGTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.25640.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis