Browse Element(s) Details


Os.32022.1.S1_x_at

Description gb:AK106307.1
DB_XREF= gi:32991516
TID=Os.32022.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.32022 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative fiber protein (OJ1720_F04.6), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-101-C11, full insert sequence.
FL= gb:AK106307.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3762011/11Cotton fibre expressed protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g37580Os.10443.1.S1_at8/117+22511401..22517062Diacylglycerol kinase catalytic domain family protein, expressed
LOC_Os07g37590Os.35344.18.S1_x_at11/117+22519597..22521364hypothetical protein
LOC_Os07g37590Os.35344.3.S1_x_at9/117+22519597..22521364hypothetical protein
LOC_Os07g37590OsAffx.22940.5.S1_x_at3/117+22519597..22521364hypothetical protein
LOC_Os07g37600OsAffx.28804.2.S1_s_at11/117+22531946..22532816hypothetical protein
LOC_Os07g37600OsAffx.28804.1.S1_x_at11/117+22531946..22532816hypothetical protein
LOC_Os07g37600OsAffx.28804.1.S1_at11/117+22531946..22532816hypothetical protein
LOC_Os07g37610Os.46019.1.S1_at10/117+22533228..22541089B3 DNA binding domain containing protein, expressed
LOC_Os07g37620Os.32022.1.S1_at11/117+22541753..22543261Cotton fibre expressed protein, expressed
LOC_Os07g37620Os.32022.1.S1_x_at11/117+22541753..22543261Cotton fibre expressed protein, expressed
LOC_Os07g37630Os.46438.1.A1_s_at11/117+22558805..22563004transposon protein, putative, unclassified, expressed
LOC_Os07g37630Os.25640.1.S1_at11/117+22558805..22563004transposon protein, putative, unclassified, expressed
LOC_Os07g37640Os.44676.1.S1_at11/117+22564063..22569813IKI3 family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.32022.1.S1_x_at--593--4711Chr07:22542325..22542349 (25 bp)
GCTGGCGCGGCATCTCAAGAAGTCG
LOC_Os07g37620
Os.32022.1.S1_x_at--410--7511Chr07:22542120..22542144 (25 bp)
GTGGAGGCGTTCATCAACAAGTTCA
LOC_Os07g37620
Os.32022.1.S1_x_at--102--2231Chr07:22542104..22542128 (25 bp)
ACAAGTTCAACATGGAGATGCGGCT
LOC_Os07g37620
Os.32022.1.S1_x_at--330--8271Chr07:22542074..22542098 (25 bp)
GGCAGGAGTCGCTCAAGCACTACAA
LOC_Os07g37620
Os.32022.1.S1_x_at--177--1411Chr07:22542059..22542083 (25 bp)
AGCACTACAACGAAATGATCAGCAG
LOC_Os07g37620
Os.32022.1.S1_x_at--1109--391Chr07:22542042..22542066 (25 bp)
ATCAGCAGAGGCAGCGTCTACTGAC
LOC_Os07g37620
Os.32022.1.S1_x_at--980--7151Chr07:22542027..22542051 (25 bp)
GTCTACTGACGATGCAGAGCAGCAA
LOC_Os07g37620
Os.32022.1.S1_x_at--800--3411Chr07:22542008..22542032 (25 bp)
CAGCAATAGCAGCAAGCAAGAGCTT
LOC_Os07g37620
Os.32022.1.S1_x_at--61--10331Chr07:22541916..22541940 (25 bp)
TTTCTTCCTTCAACTATCAGTTGTG
LOC_Os07g37620
Os.32022.1.S1_x_at--378--2311Chr07:22541850..22541874 (25 bp)
AAAGACAAGACTGTTCATATTAGGG
LOC_Os07g37620
Os.32022.1.S1_x_at--227--9991Chr07:22541760..22541784 (25 bp)
TAGCCTTTGCTTACTGAGATTGTTC
LOC_Os07g37620
Target Sequence 
GCTGGCGCGGCATCTCAAGAAGTCGGACACCTGGGAGACCCGGCCCGGCCGCCGCCAGTCCGGCAGCGGAGGTGGCGAGG
ACGCGCCACCGCCGGCGACGGCGATGCGGAAGGCGGAGACGTTCAACGAGGCCGCCGGAGGAGGAGGAGGAGGGAAGAAA
GTGCGGCGGGAGCCGTCGCTGGGGCAGGACGAGCTGAACCGGAGGGTGGAGGCGTTCATCAACAAGTTCAACATGGAGAT
GCGGCTGCAGCGGCAGGAGTCGCTCAAGCACTACAACGAAATGATCAGCAGAGGCAGCGTCTACTGACGATGCAGAGCAG
CAATAGCAGCAAGCAAGAGCTTGCTTTTTTGTTTTGTTTTGTAGTTTTGGCCTTTTTTTTCTTCTTTTGGGCTCCCTTTT
TTTTTTTAATTTCTTCCTTCAACTATCAGTTGTGTAAGAAATGGTTTTGTTCAAGGATGATAGTGATAGTACACAAAAGA
CAAGACTGTTCATATTAGGGGCGACAGATTAGTGAAGAAAAGAACAACCCAATTTCTATTGGGGTCTTGTGTATTAAATA
TTAATTAGCCTTTGCTTACTGAGATTGTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.32022.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis