Browse Element(s) Details


OsAffx.28804.2.S1_s_at

Description tigr:9635.m03731
TID=OsAffx.28804.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3760011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g37570Os.5422.1.S1_s_at11/117+22504860..22507507expressed protein
LOC_Os07g37570OsAffx.16599.1.S1_at11/117+22504860..22507507expressed protein
LOC_Os07g37580Os.10443.1.S1_at8/117+22511401..22517062Diacylglycerol kinase catalytic domain family protein, expressed
LOC_Os07g37590Os.35344.18.S1_x_at11/117+22519597..22521364hypothetical protein
LOC_Os07g37590Os.35344.3.S1_x_at9/117+22519597..22521364hypothetical protein
LOC_Os07g37590OsAffx.22940.5.S1_x_at3/117+22519597..22521364hypothetical protein
LOC_Os07g37600OsAffx.28804.2.S1_s_at11/117+22531946..22532816hypothetical protein
LOC_Os07g37600OsAffx.28804.1.S1_x_at11/117+22531946..22532816hypothetical protein
LOC_Os07g37600OsAffx.28804.1.S1_at11/117+22531946..22532816hypothetical protein
LOC_Os07g37610Os.46019.1.S1_at10/117+22533228..22541089B3 DNA binding domain containing protein, expressed
LOC_Os07g37620Os.32022.1.S1_at11/117+22541753..22543261Cotton fibre expressed protein, expressed
LOC_Os07g37620Os.32022.1.S1_x_at11/117+22541753..22543261Cotton fibre expressed protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28804.2.S1_s_at--366--8171Chr07:22532729..22532753 (25 bp)
GGAATCGATCGGGAATTCGGAACTC
LOC_Os07g37600
OsAffx.28804.2.S1_s_at--294--3051Chr07:22532731..22532755 (25 bp)
AATCGATCGGGAATTCGGAACTCGC
LOC_Os07g37600
OsAffx.28804.2.S1_s_at--502--9391Chr07:22532733..22532757 (25 bp)
TCGATCGGGAATTCGGAACTCGCAA
LOC_Os07g37600
OsAffx.28804.2.S1_s_at--452--4011Chr07:22532734..22532758 (25 bp)
CGATCGGGAATTCGGAACTCGCAAC
LOC_Os07g37600
OsAffx.28804.2.S1_s_at--377--9451Chr07:22532745..22532769 (25 bp)
TCGGAACTCGCAACGTGCATGCAGA
LOC_Os07g37600
OsAffx.28804.2.S1_s_at--608--8171Chr07:22532747..22532771 (25 bp)
GGAACTCGCAACGTGCATGCAGAGA
LOC_Os07g37600
OsAffx.28804.2.S1_s_at--510--5471Chr07:22532748..22532772 (25 bp)
GAACTCGCAACGTGCATGCAGAGAG
LOC_Os07g37600
OsAffx.28804.2.S1_s_at--448--2551Chr07:22532749..22532773 (25 bp)
AACTCGCAACGTGCATGCAGAGAGA
LOC_Os07g37600
OsAffx.28804.2.S1_s_at--818--3791Chr07:22532751..22532775 (25 bp)
CTCGCAACGTGCATGCAGAGAGAGC
LOC_Os07g37600
OsAffx.28804.2.S1_s_at--850--4111Chr07:22532753..22532777 (25 bp)
CGCAACGTGCATGCAGAGAGAGCAT
LOC_Os07g37600
OsAffx.28804.2.S1_s_at--1063--2491Chr07:22532756..22532780 (25 bp)
AACGTGCATGCAGAGAGAGCATGGA
LOC_Os07g37600
Target Sequence 
GGAATCGATCGGGAATTCGGAACTCGCAACGTGCATGCAGAGAGAGCATGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28804.2.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis