Browse Element(s) Details


OsAffx.28804.1.S1_at

Description gb:XM_353997.1
DB_XREF= gi:35189427
GEN=OJ1720_F04.4
TID=OsAffx.28804.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group).
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3760011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g37570Os.5422.1.S1_s_at11/117+22504860..22507507expressed protein
LOC_Os07g37570OsAffx.16599.1.S1_at11/117+22504860..22507507expressed protein
LOC_Os07g37580Os.10443.1.S1_at8/117+22511401..22517062Diacylglycerol kinase catalytic domain family protein, expressed
LOC_Os07g37590Os.35344.18.S1_x_at11/117+22519597..22521364hypothetical protein
LOC_Os07g37590Os.35344.3.S1_x_at9/117+22519597..22521364hypothetical protein
LOC_Os07g37590OsAffx.22940.5.S1_x_at3/117+22519597..22521364hypothetical protein
LOC_Os07g37600OsAffx.28804.2.S1_s_at11/117+22531946..22532816hypothetical protein
LOC_Os07g37600OsAffx.28804.1.S1_x_at11/117+22531946..22532816hypothetical protein
LOC_Os07g37600OsAffx.28804.1.S1_at11/117+22531946..22532816hypothetical protein
LOC_Os07g37610Os.46019.1.S1_at10/117+22533228..22541089B3 DNA binding domain containing protein, expressed
LOC_Os07g37620Os.32022.1.S1_at11/117+22541753..22543261Cotton fibre expressed protein, expressed
LOC_Os07g37620Os.32022.1.S1_x_at11/117+22541753..22543261Cotton fibre expressed protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28804.1.S1_at--800--372Chr07:22532598..22532622 (25 bp)
ATCAAGATGTTCAGATGCATGCATG
LOC_Os07g37600
OsAffx.28804.1.S1_at--565--3231Chr07:22532600..22532624 (25 bp)
CAAGATGTTCAGATGCATGCATGCA
LOC_Os07g37600
OsAffx.28804.1.S1_at--979--2793Chr07:22532601..22532625 (25 bp)
AAGATGTTCAGATGCATGCATGCAT
LOC_Os07g37600
OsAffx.28804.1.S1_at--334--411Chr07:22532637..22532661 (25 bp)
ATCAGTGTCGCGGTCTGGTTTGGTT
LOC_Os07g37600
OsAffx.28804.1.S1_at--907--9631Chr07:22532638..22532662 (25 bp)
TCAGTGTCGCGGTCTGGTTTGGTTT
LOC_Os07g37600
OsAffx.28804.1.S1_at--378--6871Chr07:22532654..22532678 (25 bp)
GTTTGGTTTTGGATTGATCGAATTT
LOC_Os07g37600
OsAffx.28804.1.S1_at--591--6351Chr07:22532669..22532693 (25 bp)
GATCGAATTTTTGTGTATGGCGGCC
LOC_Os07g37600
OsAffx.28804.1.S1_at--64--9351Chr07:22532671..22532695 (25 bp)
TCGAATTTTTGTGTATGGCGGCCAT
LOC_Os07g37600
OsAffx.28804.1.S1_at--1131--5211Chr07:22532673..22532697 (25 bp)
GAATTTTTGTGTATGGCGGCCATGC
LOC_Os07g37600
OsAffx.28804.1.S1_at--613--171Chr07:22532675..22532699 (25 bp)
ATTTTTGTGTATGGCGGCCATGCAT
LOC_Os07g37600
OsAffx.28804.1.S1_at--1080--3911Chr07:22532689..22532713 (25 bp)
CGGCCATGCATGCAGGGTGGGAGGT
LOC_Os07g37600
Target Sequence 
ATCAAGATGTTCAGATGCATGCATGCATGCATGGTGGTGATCAGTGTCGCGGTCTGGTTTGGTTTTGGATTGATCGAATT
TTTGTGTATGGCGGCCATGCATGCAGGGTGGGAGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28804.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis