Browse Element(s) Details


Os.10443.1.S1_at

Description gb:NM_185813.1
DB_XREF= gi:34898711
GEN=OJ1720_F04.1
TID=Os.10443.1
CNT=3
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.10443 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative sphingosine kinase (OJ1720_F04.1), mRNA.
PROD=putative sphingosine kinase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g375808/11Diacylglycerol kinase catalytic domain family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g37550Os.28216.2.S1_s_at11/117+22485740..22487030Chlorophyll a-b binding protein of LHCII type III, chloroplast precursor, putative, expressed
LOC_Os07g37550Os.28216.2.S1_a_at8/117+22485740..22487030Chlorophyll a-b binding protein of LHCII type III, chloroplast precursor, putative, expressed
LOC_Os07g37550Os.28216.3.S1_x_at3/117+22485740..22487030Chlorophyll a-b binding protein of LHCII type III, chloroplast precursor, putative, expressed
LOC_Os07g37560Os.10019.1.S1_a_at11/117+22487133..22496733Myosin head family protein, expressed
LOC_Os07g37570Os.5422.1.S1_s_at11/117+22504860..22507507expressed protein
LOC_Os07g37570OsAffx.16599.1.S1_at11/117+22504860..22507507expressed protein
LOC_Os07g37580Os.10443.1.S1_at8/117+22511401..22517062Diacylglycerol kinase catalytic domain family protein, expressed
LOC_Os07g37590Os.35344.18.S1_x_at11/117+22519597..22521364hypothetical protein
LOC_Os07g37590Os.35344.3.S1_x_at9/117+22519597..22521364hypothetical protein
LOC_Os07g37590OsAffx.22940.5.S1_x_at3/117+22519597..22521364hypothetical protein
LOC_Os07g37600OsAffx.28804.2.S1_s_at11/117+22531946..22532816hypothetical protein
LOC_Os07g37600OsAffx.28804.1.S1_x_at11/117+22531946..22532816hypothetical protein
LOC_Os07g37600OsAffx.28804.1.S1_at11/117+22531946..22532816hypothetical protein
LOC_Os07g37610Os.46019.1.S1_at10/117+22533228..22541089B3 DNA binding domain containing protein, expressed
LOC_Os07g37620Os.32022.1.S1_at11/117+22541753..22543261Cotton fibre expressed protein, expressed
LOC_Os07g37620Os.32022.1.S1_x_at11/117+22541753..22543261Cotton fibre expressed protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0007205biological_processprotein kinase C activation
GO:0030148biological_processsphingolipid biosynthesis
GO:0004143molecular_functiondiacylglycerol kinase activity
GO:0017050molecular_functionD-erythro-sphingosine kinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10443.1.S1_at--1001--3211Chr07:22516471..22516495 (25 bp)
CAAGGGCGGCATCATCGACTCCGAT
LOC_Os07g37580
Os.10443.1.S1_at--366--6031Chr07:22516538..22516562 (25 bp)
GAGATAGAGCACCTGATGGCCTATG
LOC_Os07g37580
Os.10443.1.S1_at--1063--9311Chr07:22516567..22516591 (25 bp)
TCCCATCCAACTGACGGTGGATCAG
LOC_Os07g37580
Os.10443.1.S1_at--470--10871Chr07:22516595..22516619 (25 bp)
TTGGCCACCATTTTCTCCCCTAGAT
LOC_Os07g37580
Os.10443.1.S1_at--1130--4351Chr07:22516599..22516623 (25 bp)
CCACCATTTTCTCCCCTAGATGATG
LOC_Os07g37580
Os.10443.1.S1_at--585--8871Chr07:22516619..22516643 (25 bp)
TGATGATGATCCTTGATCCTGCCCT
LOC_Os07g37580
Os.10443.1.S1_at--740--711Chr07:22516624..22516648 (25 bp)
ATGATCCTTGATCCTGCCCTGAATT
LOC_Os07g37580
Os.10443.1.S1_at--264--571Chr07:22516627..22516651 (25 bp)
ATCCTTGATCCTGCCCTGAATTCTT
LOC_Os07g37580
Os.10443.1.S1_at--54--10311NONE
TTTCAGAGGCTCAAACTTACTACGT
NONE
Os.10443.1.S1_at--776--1311NONE
AGAGGCTCAAACTTACTACGTGAAA
NONE
Os.10443.1.S1_at--987--8311NONE
GGCTCAAACTTACTACGTGAAATGC
NONE
Target Sequence 
CAAGGGCGGCATCATCGACTCCGATGGCGAGGTGATCGCGAGAGGGGATGGATCACACACNGGCGACGAGATAGAGCACC
TGATGGCCTATGGCCCTCCCATCCAACTGACGGTGGATCAGGNCTTGGCCACCATTTTCTCCCCTAGATGATGATGATCC
TTGATCCTGCCCTGAATTCTTCGCTTCTTTCACAGCATATGCTACATACTTACATTACACCTGTAATTACTCACACACCA
CAAATACAAGGAGAGCCACCCAAAAGCGCAATGTCCGGCGAGATCTTCCTCTCTCTCNNTTTGGCACTGATCAGTGATAG
CTGCTTTACTCAAAAGTGTGACANNGAGATTTGTATACCACAAGATTCCTGATCAATGCTGCTACTATGCTTACAAGCCT
ACAGCTGCTACTATACTTATCAATACAACTGAAACTGCAGTTTGCAAAGACAAGTAGAGGCCAACCTGCGAACCACCAAT
ATCCTACTACAGGTGTGTTTACGGGCTGCGCTGTTCTGCTTGCATCTCATTTCAGAGGCTCAAACTTACTACGTGAAATG
C

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10443.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis