Browse Element(s) Details


Os.46438.1.A1_s_at

Description gb:CR284496
DB_XREF= gi:44671062
DB_XREF=CR284496
CLONE=y746a11p3
TID=Os.46438.1
CNT=4
FEA=EST
TIER=ConsEnd
STK=2
UG=Os.46438 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequences
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3763011/11transposon protein, putative, unclassified, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g37610Os.46019.1.S1_at10/117+22533228..22541089B3 DNA binding domain containing protein, expressed
LOC_Os07g37620Os.32022.1.S1_at11/117+22541753..22543261Cotton fibre expressed protein, expressed
LOC_Os07g37620Os.32022.1.S1_x_at11/117+22541753..22543261Cotton fibre expressed protein, expressed
LOC_Os07g37630Os.46438.1.A1_s_at11/117+22558805..22563004transposon protein, putative, unclassified, expressed
LOC_Os07g37630Os.25640.1.S1_at11/117+22558805..22563004transposon protein, putative, unclassified, expressed
LOC_Os07g37640Os.44676.1.S1_at11/117+22564063..22569813IKI3 family protein, putative, expressed
LOC_Os07g37650Os.11759.1.S1_at11/117+22570439..22576212GTPase activating protein, putative, expressed
LOC_Os07g37660OsAffx.22485.1.S1_x_at11/117+22578377..22578792hypothetical protein
LOC_Os07g37670NANA7+22581259..22586123retrotransposon protein, putative, unclassified

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46438.1.A1_s_at--1073--1691Chr07:22562389..22562413 (25 bp)
AGCCACAAGGAGCTGCGAATTCTGT
LOC_Os07g37630
Os.46438.1.A1_s_at--464--10611Chr07:22562408..22562432 (25 bp)
TTCTGTACAGTGATCTTTTCGTGGA
LOC_Os07g37630
Os.46438.1.A1_s_at--553--3851Chr07:22562571..22562595 (25 bp)
CTGAGAATAGTGATGGCTAGCCCAT
LOC_Os07g37630
Os.46438.1.A1_s_at--712--4851Chr07:22562586..22562610 (25 bp)
GCTAGCCCATCCATTGTACATGTAA
LOC_Os07g37630
Os.46438.1.A1_s_at--256--3031Chr07:22562678..22562702 (25 bp)
AATCCATTTGGTCACTTATTAGTTG
LOC_Os07g37630
Os.46438.1.A1_s_at--709--6971Chr07:22562746..22562770 (25 bp)
GTAGCCTTTAAGTTGTCTCCTGCAG
LOC_Os07g37630
Os.46438.1.A1_s_at--56--9511Chr07:22562761..22562785 (25 bp)
TCTCCTGCAGTCATTCCTGTTTAGA
LOC_Os07g37630
Os.46438.1.A1_s_at--183--8231Chr07:22562793..22562817 (25 bp)
GGCAATCTATCTTCTGTCAGTGTGG
LOC_Os07g37630
Os.46438.1.A1_s_at--509--71Chr07:22562861..22562885 (25 bp)
ATTGCTTTGGTGACTGATGGGCTCC
LOC_Os07g37630
Os.46438.1.A1_s_at--1007--6251Chr07:22562876..22562900 (25 bp)
GATGGGCTCCTTACTAGTGATACGT
LOC_Os07g37630
Os.46438.1.A1_s_at--477--8831Chr07:22562893..22562917 (25 bp)
TGATACGTATGGTGCAGCGAAGCCG
LOC_Os07g37630
Target Sequence 
AGCCACAAGGAGCTGCGAATTCTGTACAGTGATCTTTTCGTGGAAATGCATTTTATATATCACCNNNNAANTNCNNGNNT
ATGTNCCCTCTNCTGACCCANTTCCTNATCCAGGTGATNNCATGGTAATATTGTGCATCTNGCTGGCTGGCAATTTGACA
ATGCTTACACATTATACCGTAGAGCTGAGAATAGTGATGGCTAGCCCATCCATTGTACATGTAATTTTCCATCGGTGTAT
TTACTGAAACAATATTAGAAAATCCATTTGGTCACTTATTAGTTGTTATTACTAACTAATAGTCATTTCAACTCAACAAC
AAAAGTCTGTAGCCTTTAAGTTGTCTCCTGCAGTCATTCCTGTTTAGAGGAAGTTGGCAATCTATCTTCTGTCAGTGTGG
TGGAATGTCGAGTGATGAATTTGGGGTTCCTCAAGTGAGAAGAATTGCTTTGGTGACTGATGGGCTCCTTACTAGTGATA
CGTATGGTGCAGCGAAGCCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46438.1.A1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis