Browse Element(s) Details


OsAffx.14754.1.S1_at

Description tigr:9633.m01700
TID=OsAffx.14754.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g1887011/11hypothetical protein
LOC_Os07g376802/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g18830NANA5+10918736..10921029hypothetical protein
LOC_Os05g18840NANA5+10921887..10923710Transposable element protein, putative, Retrotrans_gag
LOC_Os05g18850OsAffx.26948.1.S1_at11/115+10924917..10927291RNase3 domain containing protein, expressed
LOC_Os05g18860NANA5+10936804..10937181STIG1, putative
LOC_Os05g18870OsAffx.14754.1.S1_at11/115+10939806..10940144hypothetical protein
LOC_Os05g18880NANA5+10943229..10945158transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g18890OsAffx.21269.1.S1_x_at1/115+10946293..10946670retrotransposon protein, putative, unclassified
LOC_Os05g18900Os.14491.2.S1_x_at1/115+10947466..10954011transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g18900Os.47463.1.S1_x_at1/115+10947466..10954011transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g18900OsAffx.9860.1.S1_x_at1/115+10947466..10954011transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g18910Os.46995.1.S1_x_at1/115+10957906..10960833retrotransposon protein, putative, unclassified
LOC_Os05g18920NANA5+10961163..10965386retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14754.1.S1_at--115--3931Chr05:10940065..10940089 (25 bp)
CGGCGACGGAATGCGATGCTCGTTT
LOC_Os05g18870
OsAffx.14754.1.S1_at--386--4091Chr05:10940062..10940086 (25 bp)
CGACGGAATGCGATGCTCGTTTTCG
LOC_Os05g18870
OsAffx.14754.1.S1_at--200--6351Chr05:10940051..10940075 (25 bp)
GATGCTCGTTTTCGTTGTCTCGCTC
LOC_Os05g18870
OsAffx.14754.1.S1_at--215--10391Chr05:10940043..10940067 (25 bp)
TTTTCGTTGTCTCGCTCTGATTGCA
LOC_Os05g18870
OsAffx.14754.1.S1_at--1001--10811Chr05:10940038..10940061 (24 bp)
TTGTCTCGCTCTGATTGCAACTGTC
LOC_Os05g18870
OsAffx.14754.1.S1_at--1022--3791Chr05:10940038..10940057 (20 bp)
CTCGCTCTGATTGCAACTGTCTTGA
LOC_Os05g18870
OsAffx.14754.1.S1_at--767--4812Chr07:22589692..22589771 (25 bp)
GCTCTGATTGCAACTGTCTTGAAGT
LOC_Os07g37680
OsAffx.14754.1.S1_at--680--6592Chr07:22589697..22589776 (25 bp)
GATTGCAACTGTCTTGAAGTGGCTG
LOC_Os07g37680
OsAffx.14754.1.S1_at--327--7911Chr05:10939888..10939912 (25 bp)
GGTTGTTAAATGAGGCTGTGGCGCT
LOC_Os05g18870
OsAffx.14754.1.S1_at--61--4731Chr05:10939860..10939884 (25 bp)
GCTGGATATGAAGACTCGTTCTTTT
LOC_Os05g18870
OsAffx.14754.1.S1_at--165--271Chr05:10939855..10939879 (25 bp)
ATATGAAGACTCGTTCTTTTTTCTT
LOC_Os05g18870
Target Sequence 
CGGCGACGGAATGCGATGCTCGTTTTCGTTGTCTCGCTCTGATTGCAACTGTCTTGAAGTGGCTGCAAGATTTCTCTGAT
AAGGTGGAAGAAAGAGCTAAAGGAGTTGCTGCAGAAGTCAATGGGTTGTTAAATGAGGCTGTGGCGCTGGAGCTGGATAT
GAAGACTCGTTCTTTTTTCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14754.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis