Browse Element(s) Details


OsAffx.26948.1.S1_at

Description tigr:9633.m01697
TID=OsAffx.26948.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to gene_id:MQC12.21
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g1885011/11RNase3 domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g18800OsAffx.14753.1.S1_at10/115+10898082..10900858hypothetical protein
LOC_Os05g18800Os.33928.2.S1_at1/115+10898082..10900858hypothetical protein
LOC_Os05g18810NANA5+10902979..10911281transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g18820NANA5+10913764..10914425retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g18830NANA5+10918736..10921029hypothetical protein
LOC_Os05g18840NANA5+10921887..10923710Transposable element protein, putative, Retrotrans_gag
LOC_Os05g18850OsAffx.26948.1.S1_at11/115+10924917..10927291RNase3 domain containing protein, expressed
LOC_Os05g18860NANA5+10936804..10937181STIG1, putative
LOC_Os05g18870OsAffx.14754.1.S1_at11/115+10939806..10940144hypothetical protein
LOC_Os05g18880NANA5+10943229..10945158transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g18890OsAffx.21269.1.S1_x_at1/115+10946293..10946670retrotransposon protein, putative, unclassified
LOC_Os05g18900Os.14491.2.S1_x_at1/115+10947466..10954011transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g18900Os.47463.1.S1_x_at1/115+10947466..10954011transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g18900OsAffx.9860.1.S1_x_at1/115+10947466..10954011transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
GO:0000910biological_processcytokinesis
GO:0006396biological_processRNA processing
GO:0009880biological_processembryonic pattern specification
GO:0009908biological_processflower development
GO:0010098biological_processsuspensor development
GO:0010228biological_processvegetative to reproductive phase transition
GO:0030422biological_processRNA interference, production of siRNA
GO:0031053biological_processprimary microRNA processing
GO:0035279biological_processmiRNA-mediated gene silencing, mRNA cleavage
GO:0005634cellular_componentnucleus
GO:0003723molecular_functionRNA binding
GO:0003725molecular_functiondouble-stranded RNA binding
GO:0004525molecular_functionribonuclease III activity
GO:0005515molecular_functionprotein binding
GO:0008026molecular_functionATP-dependent helicase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26948.1.S1_at--814--7851Chr05:10926453..10926477 (25 bp)
GGTAGTGTTGTCAAGGCTCCCAAGG
LOC_Os05g18850
OsAffx.26948.1.S1_at--253--9331Chr05:10926470..10926494 (25 bp)
TCCCAAGGTGCTCGCTGATATTGTT
LOC_Os05g18850
OsAffx.26948.1.S1_at--604--4811Chr05:10926545..10926625 (25 bp)
GCTCTGGAAGAGACTCACATGGTTA
LOC_Os05g18850
OsAffx.26948.1.S1_at--831--2111Chr05:10926617..10926641 (25 bp)
ACATGGTTACATGGCCTCCAAGAAA
LOC_Os05g18850
OsAffx.26948.1.S1_at--537--10191Chr05:10926691..10926711 (21 bp)
TATTTATGGGAAGCGTCTGGTCACA
LOC_Os05g18850
OsAffx.26948.1.S1_at--323--9691Chr05:10926918..10926942 (25 bp)
TCACAAGGTGGCTGTTTGAGCCAAT
LOC_Os05g18850
OsAffx.26948.1.S1_at--1037--10011Chr05:10926960..10926984 (25 bp)
TAGACGAGCAACCTGTGACTATGTT
LOC_Os05g18850
OsAffx.26948.1.S1_at--1066--651Chr05:10926987..10927011 (25 bp)
ATGAACTATGCCAGAAACACGGGAA
LOC_Os05g18850
OsAffx.26948.1.S1_at--273--5651Chr05:10927048..10927072 (25 bp)
GACAGTGGTCAATGTATTTGTTGCT
LOC_Os05g18850
OsAffx.26948.1.S1_at--25--1251Chr05:10927081..10927105 (25 bp)
AGTTGGTATTGGTTCCTCGGAGCAG
LOC_Os05g18850
OsAffx.26948.1.S1_at--971--2691Chr05:10927118..10927142 (25 bp)
AAGCTTAATGCTGCACGGGATGCAA
LOC_Os05g18850
Target Sequence 
GGTAGTGTTGTCAAGGCTCCCAAGGTGCTCGCTGATATTGTTGAGGCCATTGCTGCTGCTGTCTATGTTGATTGCAAATT
TGATCTTGAGAAGCTCTGGAAGAGACTCACATGGTTACATGGCCTCCAAGAAATAAGGTGGACTGTTAATACAAATAACA
TAAAAGATTGGATAAACAATTTTATTTATGGGAAGCGTCTGGTCACAAGGTGGCTGTTTGAGCCAATTATTACAGCAGAA
ACAATAGACGAGCAACCTGTGACTATGTTGCATGAACTATGCCAGAAACACGGGAAGATGGCACAATTCAAGACATGGCA
AAAAGGTGGGATGACAGTGGTCAATGTATTTGTTGCTGGGGAGCTAGTTGGTATTGGTTCCTCGGAGCAGAAGGTAATTG
CTAAGCTTAATGCTGCACGGGATGCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26948.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis