Browse Element(s) Details


Os.33928.2.S1_at

Description gb:AK063539.1
DB_XREF= gi:32973557
TID=Os.33928.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.33928 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative Mla1 (B1085F01.18), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-117-C04, full insert sequence.
FL= gb:AK063539.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g188001/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g18774Os.49326.1.S1_at11/115+10879008..10880118Protein phosphatase inhibitor containing protein, expressed
LOC_Os05g18774Os.49326.1.S1_x_at10/115+10879008..10880118Protein phosphatase inhibitor containing protein, expressed
LOC_Os05g18780OsAffx.20707.5.S1_at9/115+10881645..10884684Rpp14 family protein, expressed
LOC_Os05g18780Os.36435.2.S1_x_at8/115+10881645..10884684Rpp14 family protein, expressed
LOC_Os05g18780OsAffx.20707.2.S1_x_at2/115+10881645..10884684Rpp14 family protein, expressed
LOC_Os05g18780OsAffx.20707.1.S1_x_at1/115+10881645..10884684Rpp14 family protein, expressed
LOC_Os05g18780Os.55138.1.S1_x_at1/115+10881645..10884684Rpp14 family protein, expressed
LOC_Os05g18780OsAffx.10665.2.S1_at1/115+10881645..10884684Rpp14 family protein, expressed
LOC_Os05g18780OsAffx.20707.2.S1_at1/115+10881645..10884684Rpp14 family protein, expressed
LOC_Os05g18790Os.49426.1.S1_at2/115+10893553..10895516Phosphoribosylglycinamide formyltransferase, chloroplast precursor, putative, expressed
LOC_Os05g18800OsAffx.14753.1.S1_at10/115+10898082..10900858hypothetical protein
LOC_Os05g18800Os.33928.2.S1_at1/115+10898082..10900858hypothetical protein
LOC_Os05g18810NANA5+10902979..10911281transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g18820NANA5+10913764..10914425retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g18830NANA5+10918736..10921029hypothetical protein
LOC_Os05g18840NANA5+10921887..10923710Transposable element protein, putative, Retrotrans_gag
LOC_Os05g18850OsAffx.26948.1.S1_at11/115+10924917..10927291RNase3 domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.33928.2.S1_at--513--102710Chr08:3643720..3643744 (24 bp)
TTTCCCAAAAATGTCACATCGAATC
NONE
Os.33928.2.S1_at--257--2332Chr02:26842468..26842487 (20 bp)
AAAGATCCGTCTTGCGGTTTCTGGG
NONE
Os.33928.2.S1_at--900--4011Chr01:24076155..24076179 (25 bp)
CGTCTTGCGGTTTCTGGGCGAGTTA
NONE
Os.33928.2.S1_at--355--10674Chr04:34628681..34628700 (20 bp)
TTCCAACATCCAATCAAACATCCGA
NONE
Os.33928.2.S1_at--982--10331Chr01:24076052..24076076 (25 bp)
TTTTCACGAAATAAACAAGGCTGTA
NONE
Os.33928.2.S1_at--1051--2211Chr01:24076038..24076062 (25 bp)
ACAAGGCTGTAACTGTTTTATGAAA
NONE
Os.33928.2.S1_at--228--5151Chr01:24076009..24076033 (25 bp)
GCAAAATGATTGTCAGCACTCCTAC
NONE
Os.33928.2.S1_at--1137--6591Chr01:24076002..24076026 (25 bp)
GATTGTCAGCACTCCTACATTAATA
NONE
Os.33928.2.S1_at--533--9811Chr01:24075979..24076003 (25 bp)
TAACTAGGTGAAACCCACACGTTAT
NONE
Os.33928.2.S1_at--1030--2591Chr01:24075968..24075992 (25 bp)
AACCCACACGTTATTGCAGGAATTT
NONE
Os.33928.2.S1_at--236--7452Chr01:24075916..24075940 (25 bp)
GTGTAAGATAGCTTAACCAACATAA
NONE
Target Sequence 
TTTCCCAAAAATGTCACATCGAATCTTTGGACACATGCATGAAACATTAAATATAGATAAAAACAAAACTAATTGCACAG
TTTGCACGGAAATCGCGAGACGAATCTTTTGAGCCTAATTAGTTCATGATTAGCCATAAGTGCTACAGTACCCCACATGT
GCTAATGACGGCTTAATTAGGCCCAAAAGATCCGTCTTGCGGTTTCTGGGCGAGTTATGAAATTAGTTTTTTCTTTCGTG
TCCGAAAACACCTTCCAACATCCAATCAAACATCCGATGTGACACCCAAATTTTTTTTTCACGAAATAAACAAGGCTGTA
ACTGTTTTATGAAAGAAAGCAAAATGATTGTCAGCACTCCTACATTAATAACTAGGTGAAACCCACACGTTATTGCAGGA
ATTTACTATGATAACAATAAGTCGAAATAATGTGTAAGATAGCTTAACCAACATAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.33928.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis