Browse Element(s) Details


Os.49326.1.S1_at

Description gb:AK121231.1
DB_XREF= gi:37990854
TID=Os.49326.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.49326 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023092L21, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023092L21, full insert sequence.
FL= gb:AK121231.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g1877411/11Protein phosphatase inhibitor containing protein, expressed
LOC_Os04g228601/11Protein phosphatase inhibitor containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g18760OsAffx.22848.3.S1_x_at3/115+10854454..10860411retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g18760OsAffx.22848.4.S1_x_at2/115+10854454..10860411retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g18760OsAffx.22848.4.S1_at2/115+10854454..10860411retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g18770Os.6431.1.S1_at11/115+10862750..10866011expressed protein
LOC_Os05g18774Os.49326.1.S1_at11/115+10879008..10880118Protein phosphatase inhibitor containing protein, expressed
LOC_Os05g18774Os.49326.1.S1_x_at10/115+10879008..10880118Protein phosphatase inhibitor containing protein, expressed
LOC_Os05g18780OsAffx.20707.5.S1_at9/115+10881645..10884684Rpp14 family protein, expressed
LOC_Os05g18780Os.36435.2.S1_x_at8/115+10881645..10884684Rpp14 family protein, expressed
LOC_Os05g18780OsAffx.20707.2.S1_x_at2/115+10881645..10884684Rpp14 family protein, expressed
LOC_Os05g18780OsAffx.20707.1.S1_x_at1/115+10881645..10884684Rpp14 family protein, expressed
LOC_Os05g18780Os.55138.1.S1_x_at1/115+10881645..10884684Rpp14 family protein, expressed
LOC_Os05g18780OsAffx.10665.2.S1_at1/115+10881645..10884684Rpp14 family protein, expressed
LOC_Os05g18780OsAffx.20707.2.S1_at1/115+10881645..10884684Rpp14 family protein, expressed
LOC_Os05g18790Os.49426.1.S1_at2/115+10893553..10895516Phosphoribosylglycinamide formyltransferase, chloroplast precursor, putative, expressed
LOC_Os05g18800OsAffx.14753.1.S1_at10/115+10898082..10900858hypothetical protein
LOC_Os05g18800Os.33928.2.S1_at1/115+10898082..10900858hypothetical protein
LOC_Os05g18810NANA5+10902979..10911281transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49326.1.S1_at--362--1951Chr05:10879443..10879467 (25 bp)
ACGGCCACGACCATTGATCTTTTTG
LOC_Os05g18774
Os.49326.1.S1_at--551--3591Chr05:10879454..10879478 (25 bp)
CATTGATCTTTTTGATTGAATTGGT
LOC_Os05g18774
Os.49326.1.S1_at--188--5191Chr05:10879471..10879854 (25 bp)
GAATTGGTACGAATTGTCAACTTAT
LOC_Os05g18774
Os.49326.1.S1_at--98--7832Chr05:10879476..10879859 (25 bp)
GGTACGAATTGTCAACTTATCGTGG
LOC_Os05g18774
Os.49326.1.S1_at--36--3171Chr05:10879900..10879924 (25 bp)
AATTGCTTCTCTGTGCCGAAACAGT
LOC_Os05g18774
Os.49326.1.S1_at--1082--10711Chr05:10879902..10879926 (25 bp)
TTGCTTCTCTGTGCCGAAACAGTAG
LOC_Os05g18774
Os.49326.1.S1_at--576--10591Chr05:10879906..10879930 (25 bp)
TTCTCTGTGCCGAAACAGTAGGTGA
LOC_Os05g18774
Os.49326.1.S1_at--1123--3771Chr05:10879908..10879932 (25 bp)
CTCTGTGCCGAAACAGTAGGTGAAA
LOC_Os05g18774
Os.49326.1.S1_at--528--4892Chr05:10879976..10880000 (25 bp)
GCTTTATTTTTGTGTGGCATTTGCA
LOC_Os05g18774
Os.49326.1.S1_at--614--4751Chr05:10880024..10880048 (25 bp)
GCTGACTTTATTGTTGGTCATGTGC
LOC_Os05g18774
Os.49326.1.S1_at--669--51Chr05:10880033..10880057 (25 bp)
ATTGTTGGTCATGTGCAATTCTCTT
LOC_Os05g18774
Target Sequence 
ACGGCCACGACCATTGATCTTTTTGATTGAATTGGTACGAATTGTCAACTTATCGTGGAACTACNGCATCAATGTGNTGA
AGTTATAACTTGAAGGGGAAAATTGCTTCTCTGTGCCGAAACAGTAGGTGAAATGATACTGCTTTGTTTTGTGTTGCGAT
TGTGGATGCTGTACTAGCTTTATTTTTGTGTGGCATTTGCAAGAGAGAAACGTTGTNCCGTATAGCTGACTTTATTGTTG
GTCATGTGCAATTCTCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49326.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis