Browse Element(s) Details


Os.6431.1.S1_at

Description gb:AK065530.1
DB_XREF= gi:32975548
TID=Os.6431.1
CNT=18
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.6431 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) mRNA for hypothetical protein, complete cds, clone: OsSad1
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013034C21, full insert sequence.
FL= gb:AK065530.1 gb:AB110207.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g1877011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g18740Os.46500.2.S1_at9/115+10840800..10843463transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g18740Os.46500.1.S1_at4/115+10840800..10843463transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g18750Os.5075.1.S1_at10/115+10844669..1084853550S ribosomal protein, putative, expressed
LOC_Os05g18760OsAffx.22848.3.S1_x_at3/115+10854454..10860411retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g18760OsAffx.22848.4.S1_x_at2/115+10854454..10860411retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g18760OsAffx.22848.4.S1_at2/115+10854454..10860411retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g18770Os.6431.1.S1_at11/115+10862750..10866011expressed protein
LOC_Os05g18774Os.49326.1.S1_at11/115+10879008..10880118Protein phosphatase inhibitor containing protein, expressed
LOC_Os05g18774Os.49326.1.S1_x_at10/115+10879008..10880118Protein phosphatase inhibitor containing protein, expressed
LOC_Os05g18780OsAffx.20707.5.S1_at9/115+10881645..10884684Rpp14 family protein, expressed
LOC_Os05g18780Os.36435.2.S1_x_at8/115+10881645..10884684Rpp14 family protein, expressed
LOC_Os05g18780OsAffx.20707.2.S1_x_at2/115+10881645..10884684Rpp14 family protein, expressed
LOC_Os05g18780OsAffx.20707.1.S1_x_at1/115+10881645..10884684Rpp14 family protein, expressed
LOC_Os05g18780Os.55138.1.S1_x_at1/115+10881645..10884684Rpp14 family protein, expressed
LOC_Os05g18780OsAffx.10665.2.S1_at1/115+10881645..10884684Rpp14 family protein, expressed
LOC_Os05g18780OsAffx.20707.2.S1_at1/115+10881645..10884684Rpp14 family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005635cellular_componentnuclear envelope
GO:0005819cellular_componentspindle
GO:0009524cellular_componentphragmoplast
Probe Info

Probe NameHit(s)LocationSequenceTIGR Locus
Os.6431.1.S1_at--630--3011Chr05:10863240..10863264 (25 bp)
AATGCACAGACCTTCCAACTGGAGA
LOC_Os05g18770
Os.6431.1.S1_at--860--2491Chr05:10863192..10863216 (25 bp)
AACATGGTTCGGCTTGACTTCTGCT
LOC_Os05g18770
Os.6431.1.S1_at--379--5651Chr05:10863145..10863169 (25 bp)
GACATGCATCTATCGCTTCAGGGTG
LOC_Os05g18770
Os.6431.1.S1_at--11--5911Chr05:10863067..10863091 (25 bp)
GAGCTGCATGCCTGAGTTTGACAAC
LOC_Os05g18770
Os.6431.1.S1_at--839--551Chr05:10863042..10863066 (25 bp)
ATCCTCAGGCTTCAATATACCCAGT
LOC_Os05g18770
Os.6431.1.S1_at--785--291Chr05:10862978..10863002 (25 bp)
ATAGAAGTGTGGTGCGGCTCCATCT
LOC_Os05g18770
Os.6431.1.S1_at--437--3111Chr05:10862914..10862938 (25 bp)
AATATGCTGACTCGCAGTTCTGCTA
LOC_Os05g18770
Os.6431.1.S1_at--723--7091Chr05:10862882..10862906 (25 bp)
GTCACACTTGTTTGTATCTGCTCAC
LOC_Os05g18770
Os.6431.1.S1_at--671--471Chr05:10862867..10862891 (25 bp)
ATCTGCTCACTCTGATAGTCTGATT
LOC_Os05g18770
Os.6431.1.S1_at--189--10071Chr05:10862852..10862876 (25 bp)
TAGTCTGATTGCTCTTTGGTATGGT
LOC_Os05g18770
Os.6431.1.S1_at--31--10211Chr05:10862774..10862798 (25 bp)
TATTCATTCGGTGACTCGTGGGCAT
LOC_Os05g18770
Target Sequence
AATGCACAGACCTTCCAACTGGAGAGAACCGCAGATTCACGAGTCATCAACATGGTTCGGCTTGACTTCTGCTCAAACCA
TGGAAATTCAGAACTGACATGCATCTATCGCTTCAGGGTGCATGGTAGAGAACCTGGCTCTCCTTAAGCTGCTGCAGTGA
AAGCCTGATCTGAGAGCTGCATGCCTGAGTTTGACAACATCCTCAGGCTTCAATATACCCAGTAAGACAATGATTCTAGT
CCACTGGATTGACTGTTAGAAGATAGAAGTGTGGTGCGGCTCCATCTGACTCAGGTTGATTTTACTCTGTATCATAATGC
CATGAAAATATGCTGACTCGCAGTTCTGCTAGCTAGATGTCACACTTGTTTGTATCTGCTCACTCTGATAGTCTGATTGC
TCTTTGGTATGGTTGTATTGTAATTGGTAGCTATCCTGTTATTTACAACTTTAGTTTATTGGGGTGTATTCATTCGGTGA
CTCGTGGGCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6431.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis