Browse Element(s) Details


OsAffx.14753.1.S1_at

Description tigr:9633.m01692
TID=OsAffx.14753.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g1880010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g18774Os.49326.1.S1_at11/115+10879008..10880118Protein phosphatase inhibitor containing protein, expressed
LOC_Os05g18774Os.49326.1.S1_x_at10/115+10879008..10880118Protein phosphatase inhibitor containing protein, expressed
LOC_Os05g18780OsAffx.20707.5.S1_at9/115+10881645..10884684Rpp14 family protein, expressed
LOC_Os05g18780Os.36435.2.S1_x_at8/115+10881645..10884684Rpp14 family protein, expressed
LOC_Os05g18780OsAffx.20707.2.S1_x_at2/115+10881645..10884684Rpp14 family protein, expressed
LOC_Os05g18780OsAffx.20707.1.S1_x_at1/115+10881645..10884684Rpp14 family protein, expressed
LOC_Os05g18780Os.55138.1.S1_x_at1/115+10881645..10884684Rpp14 family protein, expressed
LOC_Os05g18780OsAffx.10665.2.S1_at1/115+10881645..10884684Rpp14 family protein, expressed
LOC_Os05g18780OsAffx.20707.2.S1_at1/115+10881645..10884684Rpp14 family protein, expressed
LOC_Os05g18790Os.49426.1.S1_at2/115+10893553..10895516Phosphoribosylglycinamide formyltransferase, chloroplast precursor, putative, expressed
LOC_Os05g18800OsAffx.14753.1.S1_at10/115+10898082..10900858hypothetical protein
LOC_Os05g18800Os.33928.2.S1_at1/115+10898082..10900858hypothetical protein
LOC_Os05g18810NANA5+10902979..10911281transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g18820NANA5+10913764..10914425retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g18830NANA5+10918736..10921029hypothetical protein
LOC_Os05g18840NANA5+10921887..10923710Transposable element protein, putative, Retrotrans_gag
LOC_Os05g18850OsAffx.26948.1.S1_at11/115+10924917..10927291RNase3 domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14753.1.S1_at--184--1551Chr05:10900101..10900125 (25 bp)
AGCATTGCCAGCCTTGCTGAAGTGG
LOC_Os05g18800
OsAffx.14753.1.S1_at--867--10471NONE
TTACTCTGACAACCACATCAAGGAG
NONE
OsAffx.14753.1.S1_at--1045--4751Chr05:10898590..10898614 (25 bp)
GCTGCATGAGGAGTTGCGGCAACAT
LOC_Os05g18800
OsAffx.14753.1.S1_at--1151--4751Chr05:10898533..10898557 (25 bp)
GCTGCTACCATGCAGTCGGTTTCAA
LOC_Os05g18800
OsAffx.14753.1.S1_at--744--1151Chr05:10898520..10898544 (25 bp)
AGTCGGTTTCAACCTGACCTGCAAC
LOC_Os05g18800
OsAffx.14753.1.S1_at--548--6171Chr05:10898387..10898411 (25 bp)
GAGGACAATGGCCTTGGAAGCACAA
LOC_Os05g18800
OsAffx.14753.1.S1_at--553--8871Chr05:10898289..10898313 (25 bp)
TGATGGGCTGCAACTCCTAGGTCGT
LOC_Os05g18800
OsAffx.14753.1.S1_at--636--9731Chr05:10898242..10898266 (25 bp)
TAATTGGTTGCCTCTTGCAGTGTCA
LOC_Os05g18800
OsAffx.14753.1.S1_at--887--71Chr05:10898207..10898231 (25 bp)
ATTGCCCTCACAAGGACGCTTCTTA
LOC_Os05g18800
OsAffx.14753.1.S1_at--415--5211Chr05:10898181..10898205 (25 bp)
GAATTTTCAGGACAAGTGCGTGCTC
LOC_Os05g18800
OsAffx.14753.1.S1_at--764--9851Chr05:10898114..10898138 (25 bp)
TACACTTGGGTCATTTCATTGTCAA
LOC_Os05g18800
Target Sequence 
AGCATTGCCAGCCTTGCTGAAGTGGGTAATCATTACTCTGACAACCACATCAAGGAGTGGCCGTGGCGGCTGCATGAGGA
GTTGCGGCAACATCAGCATCGAGTACCCGTTCGGCGTGGAGCCCGGCTGCTACCATGCAGTCGGTTTCAACCTGACCTGC
AACCACTCGTACCAGCTGCCCAGGCTGTTCCTCGACGATGGCACGGTGCAGGTGCTCAACATCTCCATCCCCAATGGAAC
CGTGCGAATCAACAGCGGCCGAATCAATCTCGAGGACAATGGCCTTGGAAGCACAAACGGGACATGGGGGCGGTGGCCCC
CCAATTGGCGGGCCGTTCTTTCTGTCGGAGTCGGAGAGCAGACTGGTGTTGATGGGCTGCAACTCCTAGGTCGTTGTCTG
GGAGCTAAGAGGAAACTAATTGGTTGCCTCTTGCAGTGTCATCTGCCCATCATTGCCCTCACAAGGACGCTTCTTAGGAA
TTTTCAGGACAAGTGCGTGCTCGGGCATTGCTTGTTGTCAAACAAACATCATTTTAGGCAAAAATACACTTGGGTCATTT
CATTGTCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14753.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis