Browse Element(s) Details


OsAffx.9860.1.S1_x_at

Description gb:NM_188750.1
DB_XREF= gi:34904583
GEN=B1008C01.25
TID=OsAffx.9860.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) B1008C01.25 (B1008C01.25), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g143002/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g237391/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g113101/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g189001/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g262301/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g494001/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g167801/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g366401/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g221901/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g260801/11transposon protein, putative, CACTA, En/Spm sub-class
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g14250OsAffx.23236.1.S1_at11/111+7985738..7987269hypothetical protein
LOC_Os01g14260OsAffx.29789.3.S1_x_at9/111+7989842..7993957hAT family dimerisation domain containing protein
LOC_Os01g14260OsAffx.29789.1.S1_x_at7/111+7989842..7993957hAT family dimerisation domain containing protein
LOC_Os01g14260OsAffx.31885.2.S1_x_at2/111+7989842..7993957hAT family dimerisation domain containing protein
LOC_Os01g14270OsAffx.22046.1.S1_at11/111+7994293..7999812F-box domain containing protein
LOC_Os01g14270OsAffx.22046.2.S1_s_at11/111+7994293..7999812F-box domain containing protein
LOC_Os01g14270OsAffx.22046.2.S1_at8/111+7994293..7999812F-box domain containing protein
LOC_Os01g14270OsAffx.22046.3.S1_x_at3/111+7994293..7999812F-box domain containing protein
LOC_Os01g14270OsAffx.22046.3.S1_at2/111+7994293..7999812F-box domain containing protein
LOC_Os01g14270Os.57198.1.S1_at2/111+7994293..7999812F-box domain containing protein
LOC_Os01g14270OsAffx.27239.2.S1_at1/111+7994293..7999812F-box domain containing protein
LOC_Os01g14280OsAffx.2002.1.S1_s_at11/111+8000882..8002018hypothetical protein
LOC_Os01g14280OsAffx.2002.2.S1_at11/111+8000882..8002018hypothetical protein
LOC_Os01g14290OsAffx.22940.2.S1_s_at11/111+8003677..8006140hypothetical protein
LOC_Os01g14290OsAffx.22940.1.S1_s_at11/111+8003677..8006140hypothetical protein
LOC_Os01g14290OsAffx.22940.5.S1_x_at10/111+8003677..8006140hypothetical protein
LOC_Os01g14290OsAffx.22940.3.S1_x_at9/111+8003677..8006140hypothetical protein
LOC_Os01g14290OsAffx.22940.5.S1_at9/111+8003677..8006140hypothetical protein
LOC_Os01g14290OsAffx.22940.2.S1_at6/111+8003677..8006140hypothetical protein
LOC_Os01g14290Os.35344.3.S1_x_at6/111+8003677..8006140hypothetical protein
LOC_Os01g14290Os.35344.18.S1_x_at5/111+8003677..8006140hypothetical protein
LOC_Os01g14290OsAffx.31552.2.S1_at1/111+8003677..8006140hypothetical protein
LOC_Os01g14300OsAffx.9860.1.S1_x_at2/111+8008839..8010609transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g14300OsAffx.11047.1.S1_at1/111+8008839..8010609transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g14310OsAffx.22044.1.S1_at11/111+8013354..8015837hypothetical protein
LOC_Os01g14320OsAffx.23239.1.S1_x_at11/111+8020589..8021737hypothetical protein
LOC_Os01g14330OsAffx.9859.1.S1_at11/111+8027686..8028573hypothetical protein
LOC_Os01g14340OsAffx.23240.1.S1_x_at10/111+8029678..8031824hypothetical protein
LOC_Os01g14340OsAffx.23240.2.S1_at1/111+8029678..8031824hypothetical protein
LOC_Os01g14350OsAffx.23240.1.S1_x_at6/111+8034696..8036492hypothetical protein
LOC_Os01g14350OsAffx.23240.2.S1_at1/111+8034696..8036492hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.9860.1.S1_x_at--744--10855Chr12:9613978..9613998 (21 bp)
TTGGTCAGATATTGCAGGACGTCAA
LOC_Os12g16780
OsAffx.9860.1.S1_x_at--52--231Chr01:8010346..8010370 (25 bp)
ATATTGCAGGACGTCAAGGAGGACT
LOC_Os01g14300
OsAffx.9860.1.S1_x_at--1071--7071NONE
GTCAAGGAGGACTGCGAAACTCTCT
NONE
OsAffx.9860.1.S1_x_at--709--991NONE
AGGAGGACTGCGAAACTCTCTCTCC
NONE
OsAffx.9860.1.S1_x_at--1017--8011NONE
GGAGGACTGCGAAACTCTCTCTCCG
NONE
OsAffx.9860.1.S1_x_at--389--6191NONE
GAGGACTGCGAAACTCTCTCTCCGA
NONE
OsAffx.9860.1.S1_x_at--922--951NONE
AGGACTGCGAAACTCTCTCTCCGAT
NONE
OsAffx.9860.1.S1_x_at--1010--5711NONE
GACTGCGAAACTCTCTCTCCGATCT
NONE
OsAffx.9860.1.S1_x_at--431--9131NONE
TGCGAAACTCTCTCTCCGATCTCGA
NONE
OsAffx.9860.1.S1_x_at--1024--8331Chr01:8011787..8011811 (25 bp)
GGCTGAACATGACTCCGCCGCGCCA
NONE
OsAffx.9860.1.S1_x_at--818--18511Chr12:15796774..15796798 (25 bp)
ACGACACGCCGGGACGCCACGACGC
NONE
Target Sequence 
TTGGTCAGATATTGCAGGACGTCAAGGAGGACTGCGAAACTCTCTCTCCGATCTCGATCTCTCTCTCTCTCTCGGTTGCC
GCCGGCCGCCTCGTTGCCGACGCCGACGCCGACGTCGTCGCGGCTGAACATGACTCCGCCGCGCCACGACGCCGCGGCGG
CACGACACGCCGGGACGCCACGACGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.9860.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis