Browse Element(s) Details


OsAffx.22046.3.S1_x_at

Description tigr:9639.m00419
TID=OsAffx.22046.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g142703/11F-box domain containing protein
LOC_Os05g395501/11ZIP Zinc transporter family protein, expressed
LOC_Os09g282401/11hypothetical protein
LOC_Os08g330301/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g14220OsAffx.1999.1.S1_at11/111+7970447..7971613hypothetical protein
LOC_Os01g14220OsAffx.1999.2.S1_s_at1/111+7970447..7971613hypothetical protein
LOC_Os01g14230OsAffx.11047.1.S1_at11/111+7977444..7978379hypothetical protein
LOC_Os01g14240OsAffx.22047.1.S1_at8/111+7981429..7981748hypothetical protein
LOC_Os01g14250OsAffx.23236.1.S1_at11/111+7985738..7987269hypothetical protein
LOC_Os01g14260OsAffx.29789.3.S1_x_at9/111+7989842..7993957hAT family dimerisation domain containing protein
LOC_Os01g14260OsAffx.29789.1.S1_x_at7/111+7989842..7993957hAT family dimerisation domain containing protein
LOC_Os01g14260OsAffx.31885.2.S1_x_at2/111+7989842..7993957hAT family dimerisation domain containing protein
LOC_Os01g14270OsAffx.22046.1.S1_at11/111+7994293..7999812F-box domain containing protein
LOC_Os01g14270OsAffx.22046.2.S1_s_at11/111+7994293..7999812F-box domain containing protein
LOC_Os01g14270OsAffx.22046.2.S1_at8/111+7994293..7999812F-box domain containing protein
LOC_Os01g14270OsAffx.22046.3.S1_x_at3/111+7994293..7999812F-box domain containing protein
LOC_Os01g14270OsAffx.22046.3.S1_at2/111+7994293..7999812F-box domain containing protein
LOC_Os01g14270Os.57198.1.S1_at2/111+7994293..7999812F-box domain containing protein
LOC_Os01g14270OsAffx.27239.2.S1_at1/111+7994293..7999812F-box domain containing protein
LOC_Os01g14280OsAffx.2002.1.S1_s_at11/111+8000882..8002018hypothetical protein
LOC_Os01g14280OsAffx.2002.2.S1_at11/111+8000882..8002018hypothetical protein
LOC_Os01g14290OsAffx.22940.2.S1_s_at11/111+8003677..8006140hypothetical protein
LOC_Os01g14290OsAffx.22940.1.S1_s_at11/111+8003677..8006140hypothetical protein
LOC_Os01g14290OsAffx.22940.5.S1_x_at10/111+8003677..8006140hypothetical protein
LOC_Os01g14290OsAffx.22940.3.S1_x_at9/111+8003677..8006140hypothetical protein
LOC_Os01g14290OsAffx.22940.5.S1_at9/111+8003677..8006140hypothetical protein
LOC_Os01g14290OsAffx.22940.2.S1_at6/111+8003677..8006140hypothetical protein
LOC_Os01g14290Os.35344.3.S1_x_at6/111+8003677..8006140hypothetical protein
LOC_Os01g14290Os.35344.18.S1_x_at5/111+8003677..8006140hypothetical protein
LOC_Os01g14290OsAffx.31552.2.S1_at1/111+8003677..8006140hypothetical protein
LOC_Os01g14300OsAffx.9860.1.S1_x_at2/111+8008839..8010609transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g14300OsAffx.11047.1.S1_at1/111+8008839..8010609transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g14310OsAffx.22044.1.S1_at11/111+8013354..8015837hypothetical protein
LOC_Os01g14320OsAffx.23239.1.S1_x_at11/111+8020589..8021737hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006812biological_processcation transport
GO:0006829biological_processzinc ion transport
GO:0030001biological_processmetal ion transport
GO:0009507cellular_componentchloroplast
GO:0016020cellular_componentmembrane
GO:0005375molecular_functioncopper ion transporter activity
GO:0005385molecular_functionzinc ion transporter activity
GO:0008324molecular_functioncation transporter activity
GO:0046873molecular_functionmetal ion transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.22046.3.S1_x_at--970--5311NONE
GAAGTGCACGAGAATTATGATACCT
NONE
OsAffx.22046.3.S1_x_at--1056--5951Chr11:2172646..2172669 (24 bp)
GAGAATTATGATACCTCCAACGTAT
NONE
OsAffx.22046.3.S1_x_at--343--3811Chr11:2172632..2172656 (25 bp)
CTCCAACGTATCACATGATCTTCCT
NONE
OsAffx.22046.3.S1_x_at--450--6431Chr11:2172616..2172640 (25 bp)
GATCTTCCTAAGATATCATCAGTGA
NONE
OsAffx.22046.3.S1_x_at--1151--713Chr05:23127098..23127121 (24 bp)
ATGATAATACCATCCATGATACTGA
LOC_Os05g39550
OsAffx.22046.3.S1_x_at--1151--3798Chr03:7124598..7124618 (21 bp)
CTCCCAGGTATCACACATAATGATA
NONE
OsAffx.22046.3.S1_x_at--775--9694Chr03:7124889..7124908 (20 bp)
TCACACATAATGATACTTTGCAGTA
NONE
OsAffx.22046.3.S1_x_at--984--5531Chr11:2172071..2172434 (25 bp)
GAAACTTTCAGATCATATCCTTGTA
NONE
OsAffx.22046.3.S1_x_at--683--10871Chr11:2171742..2171766 (25 bp)
TTGGCGAGCGCTTGTCGTCGTTCAC
NONE
OsAffx.22046.3.S1_x_at--761--5871Chr11:2171737..2171761 (25 bp)
GAGCGCTTGTCGTCGTTCACGTTTT
NONE
OsAffx.22046.3.S1_x_at--404--4131Chr11:2171734..2171758 (25 bp)
CGCTTGTCGTCGTTCACGTTTTGCT
NONE
Target Sequence 
GAAGTGCACGAGAATTATGATACCTCCAACGTATCACATGATCTTCCTAAGATATCATCAGTGAAACATGATAATACCAT
CCATGATACTGAGGAGGATCATGATACCTCCCAGGTATCACACATAATGATACTTTGCAGTATCATGTATGAAACTTTCA
GATCATATCCTTGTAAAACACGATTCCGAGGATGTTTCATGGGGAAGCAGAAGAGCCAGCGGACGGCGAGGCTTCCGCTG
GAAAGAAGCGAGGAATCGCGCGCCGCAATTCCGAGGAGGTTTCACTGGGATGTAGAGGAGCTGGCGGATGATGCTCGCGC
CGGTGGAAGGAAGCGAGGAATCACGCGCTTTCTAGGAGGATTTGCCATGATGCGGAGAAGCCGGCGGACGGTGCGCGTGC
CAGCGGGAGGAAGCAAGGAATCGCGCGCGAAGGCGCGCGCTTCCGAGGAGGTTTCGCTGAGATGTAGGGAAGCCGGCGTT
TGGCGAGCGCTTGTCGTCGTTCACGTTTTGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.22046.3.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis