Browse Element(s) Details


OsAffx.1999.2.S1_s_at

Description gb:NM_188741.1
DB_XREF= gi:34904565
GEN=B1008C01.15
TID=OsAffx.1999.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) B1008C01.15 (B1008C01.15), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g142201/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g14190OsAffx.13631.4.S1_s_at11/111+7944195..7946605hAT family dimerisation domain containing protein
LOC_Os01g14190OsAffx.22917.1.S1_x_at3/111+7944195..7946605hAT family dimerisation domain containing protein
LOC_Os01g14200NANA1+7950225..7961102AT hook motif-containing protein, putative, expressed
LOC_Os01g14210OsAffx.1999.3.S1_at11/111+7966664..7967557hypothetical protein
LOC_Os01g14220OsAffx.1999.1.S1_at11/111+7970447..7971613hypothetical protein
LOC_Os01g14220OsAffx.1999.2.S1_s_at1/111+7970447..7971613hypothetical protein
LOC_Os01g14230OsAffx.11047.1.S1_at11/111+7977444..7978379hypothetical protein
LOC_Os01g14240OsAffx.22047.1.S1_at8/111+7981429..7981748hypothetical protein
LOC_Os01g14250OsAffx.23236.1.S1_at11/111+7985738..7987269hypothetical protein
LOC_Os01g14260OsAffx.29789.3.S1_x_at9/111+7989842..7993957hAT family dimerisation domain containing protein
LOC_Os01g14260OsAffx.29789.1.S1_x_at7/111+7989842..7993957hAT family dimerisation domain containing protein
LOC_Os01g14260OsAffx.31885.2.S1_x_at2/111+7989842..7993957hAT family dimerisation domain containing protein
LOC_Os01g14270OsAffx.22046.1.S1_at11/111+7994293..7999812F-box domain containing protein
LOC_Os01g14270OsAffx.22046.2.S1_s_at11/111+7994293..7999812F-box domain containing protein
LOC_Os01g14270OsAffx.22046.2.S1_at8/111+7994293..7999812F-box domain containing protein
LOC_Os01g14270OsAffx.22046.3.S1_x_at3/111+7994293..7999812F-box domain containing protein
LOC_Os01g14270OsAffx.22046.3.S1_at2/111+7994293..7999812F-box domain containing protein
LOC_Os01g14270Os.57198.1.S1_at2/111+7994293..7999812F-box domain containing protein
LOC_Os01g14270OsAffx.27239.2.S1_at1/111+7994293..7999812F-box domain containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.1999.2.S1_s_at--449--6411Chr01:7967048..7967072 (25 bp)
GATCTGGTGGGTGGATCTCTCGTAC
NONE
OsAffx.1999.2.S1_s_at--625--8291Chr01:7967023..7967047 (25 bp)
GGCTTCCTCGCCTTGGATCTCAGCG
NONE
OsAffx.1999.2.S1_s_at--177--7971Chr01:7967009..7967033 (25 bp)
GGATCTCAGCGTCGCCCACCGTGAG
NONE
OsAffx.1999.2.S1_s_at--306--6651Chr01:7966901..7966925 (25 bp)
GTTGAACTTCGGTGAGCTGCGGTAC
NONE
OsAffx.1999.2.S1_s_at--190--7191Chr01:7966852..7966876 (25 bp)
GTCGGCCCGATCGTCAGCATGTGGA
NONE
OsAffx.1999.2.S1_s_at--643--511Chr01:7966843..7966867 (25 bp)
ATCGTCAGCATGTGGACGCTGCTCG
NONE
OsAffx.1999.2.S1_s_at--413--4912Chr01:7970700..7970724 (25 bp)
GCTTCGACTGCGAGGCGAGCTTCAA
LOC_Os01g14220
OsAffx.1999.2.S1_s_at--617--4031Chr01:7966770..7966794 (25 bp)
CGATCTGGGCCGACGAGGGTTACAA
NONE
OsAffx.1999.2.S1_s_at--460--4211Chr01:7966761..7966785 (25 bp)
CCGACGAGGGTTACAAGGCGACCAT
NONE
OsAffx.1999.2.S1_s_at--26--10491Chr01:7966751..7966775 (25 bp)
TTACAAGGCGACCATGCTGCCGCCG
NONE
OsAffx.1999.2.S1_s_at--46--1511Chr01:7966695..7966719 (25 bp)
AGCACCCCGGCGATGTGGCCTACTT
NONE
Target Sequence 
GATCTGGTGGGTGGATCTCTCGTACGGCTTCCTCGCCTTGGATCTCAGCGTCGCCCACCGTGAGCTGCGCTTCGTCCCGC
TCCCGGTCGGCCGCGAGCTGCCACCGGGCACGGGCGGCCGGGACCTCGAGAAGAGCCGGTGCGTGGGGTTGAACTTCGGT
GAGCTGCGGTACGTGGAGATCGACGAGCGCGACGGCGTCGGCCCGATCGTCAGCATGTGGACGCTGCTCGACGAGGATGC
CGGGACGTGGAGCTTCGACTGCGAGGCGAGCTTCAAGGCGATCTGGGCCGACGAGGGTTACAAGGCGACCATGCTGCCGC
CGGAGATCCCCACGGTGGCGCTCATCCACCCGGAGCACCCCGGCGATGTGGCCTACTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.1999.2.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis