Browse Element(s) Details


OsAffx.22046.2.S1_s_at

Description gb:NM_188746.1
DB_XREF= gi:34904575
GEN=B1008C01.21
TID=OsAffx.22046.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) B1008C01.21 (B1008C01.21), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1427011/11F-box domain containing protein
LOC_Os11g050202/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g14220OsAffx.1999.1.S1_at11/111+7970447..7971613hypothetical protein
LOC_Os01g14220OsAffx.1999.2.S1_s_at1/111+7970447..7971613hypothetical protein
LOC_Os01g14230OsAffx.11047.1.S1_at11/111+7977444..7978379hypothetical protein
LOC_Os01g14240OsAffx.22047.1.S1_at8/111+7981429..7981748hypothetical protein
LOC_Os01g14250OsAffx.23236.1.S1_at11/111+7985738..7987269hypothetical protein
LOC_Os01g14260OsAffx.29789.3.S1_x_at9/111+7989842..7993957hAT family dimerisation domain containing protein
LOC_Os01g14260OsAffx.29789.1.S1_x_at7/111+7989842..7993957hAT family dimerisation domain containing protein
LOC_Os01g14260OsAffx.31885.2.S1_x_at2/111+7989842..7993957hAT family dimerisation domain containing protein
LOC_Os01g14270OsAffx.22046.1.S1_at11/111+7994293..7999812F-box domain containing protein
LOC_Os01g14270OsAffx.22046.2.S1_s_at11/111+7994293..7999812F-box domain containing protein
LOC_Os01g14270OsAffx.22046.2.S1_at8/111+7994293..7999812F-box domain containing protein
LOC_Os01g14270OsAffx.22046.3.S1_x_at3/111+7994293..7999812F-box domain containing protein
LOC_Os01g14270OsAffx.22046.3.S1_at2/111+7994293..7999812F-box domain containing protein
LOC_Os01g14270Os.57198.1.S1_at2/111+7994293..7999812F-box domain containing protein
LOC_Os01g14270OsAffx.27239.2.S1_at1/111+7994293..7999812F-box domain containing protein
LOC_Os01g14280OsAffx.2002.1.S1_s_at11/111+8000882..8002018hypothetical protein
LOC_Os01g14280OsAffx.2002.2.S1_at11/111+8000882..8002018hypothetical protein
LOC_Os01g14290OsAffx.22940.2.S1_s_at11/111+8003677..8006140hypothetical protein
LOC_Os01g14290OsAffx.22940.1.S1_s_at11/111+8003677..8006140hypothetical protein
LOC_Os01g14290OsAffx.22940.5.S1_x_at10/111+8003677..8006140hypothetical protein
LOC_Os01g14290OsAffx.22940.3.S1_x_at9/111+8003677..8006140hypothetical protein
LOC_Os01g14290OsAffx.22940.5.S1_at9/111+8003677..8006140hypothetical protein
LOC_Os01g14290OsAffx.22940.2.S1_at6/111+8003677..8006140hypothetical protein
LOC_Os01g14290Os.35344.3.S1_x_at6/111+8003677..8006140hypothetical protein
LOC_Os01g14290Os.35344.18.S1_x_at5/111+8003677..8006140hypothetical protein
LOC_Os01g14290OsAffx.31552.2.S1_at1/111+8003677..8006140hypothetical protein
LOC_Os01g14300OsAffx.9860.1.S1_x_at2/111+8008839..8010609transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g14300OsAffx.11047.1.S1_at1/111+8008839..8010609transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g14310OsAffx.22044.1.S1_at11/111+8013354..8015837hypothetical protein
LOC_Os01g14320OsAffx.23239.1.S1_x_at11/111+8020589..8021737hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.22046.2.S1_s_at--1055--9632Chr11:2173260..2173284 (25 bp)
TCAGTGTCGCCGCTGAAGTGCACGA
LOC_Os11g05020
OsAffx.22046.2.S1_s_at--1140--3452Chr11:2173259..2173283 (25 bp)
CAGTGTCGCCGCTGAAGTGCACGAG
LOC_Os11g05020
OsAffx.22046.2.S1_s_at--558--3032Chr11:2171968..2171992 (25 bp)
AATCGCGCGCCGCAATTCCGAGGAG
NONE
OsAffx.22046.2.S1_s_at--23--9352Chr11:2171966..2171990 (25 bp)
TCGCGCGCCGCAATTCCGAGGAGGT
NONE
OsAffx.22046.2.S1_s_at--1080--4552Chr11:2171964..2171988 (25 bp)
GCGCGCCGCAATTCCGAGGAGGTTT
NONE
OsAffx.22046.2.S1_s_at--1076--4512Chr11:2171960..2171984 (25 bp)
GCCGCAATTCCGAGGAGGTTTCACT
NONE
OsAffx.22046.2.S1_s_at--1045--4052Chr11:2171958..2171982 (25 bp)
CGCAATTCCGAGGAGGTTTCACTGG
NONE
OsAffx.22046.2.S1_s_at--653--3132Chr11:2171955..2171979 (25 bp)
AATTCCGAGGAGGTTTCACTGGGAT
NONE
OsAffx.22046.2.S1_s_at--862--9272Chr11:2171952..2171976 (25 bp)
TCCGAGGAGGTTTCACTGGGATGTA
NONE
OsAffx.22046.2.S1_s_at--668--10512Chr11:2171941..2171965 (25 bp)
TTCACTGGGATGTAGAGGAGCTGGC
NONE
OsAffx.22046.2.S1_s_at--675--972Chr11:2171926..2171950 (25 bp)
AGGAGCTGGCGGATGATGCTCGCGC
NONE
Target Sequence 
TCAGTGTCGCCGCTGAAGTGCACGAGGTCAGTGTGGGAGAGCGGCGATGTTTCATTGGGAAGCAGAAGAGCCGGCGGACG
GCGAGGGTTCCGCTGGAAAGAAGCGAGGAATCGCGCGCCGCAATTCCGAGGAGGTTTCACTGGGATGTAGAGGAGCTGGC
GGATGATGCTCGCGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.22046.2.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis