Browse Element(s) Details


OsAffx.1999.1.S1_at

Description gb:NM_188742.1
DB_XREF= gi:34904567
GEN=B1008C01.16
TID=OsAffx.1999.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) B1008C01.16 (B1008C01.16), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1422011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g14190OsAffx.13631.4.S1_s_at11/111+7944195..7946605hAT family dimerisation domain containing protein
LOC_Os01g14190OsAffx.22917.1.S1_x_at3/111+7944195..7946605hAT family dimerisation domain containing protein
LOC_Os01g14200NANA1+7950225..7961102AT hook motif-containing protein, putative, expressed
LOC_Os01g14210OsAffx.1999.3.S1_at11/111+7966664..7967557hypothetical protein
LOC_Os01g14220OsAffx.1999.1.S1_at11/111+7970447..7971613hypothetical protein
LOC_Os01g14220OsAffx.1999.2.S1_s_at1/111+7970447..7971613hypothetical protein
LOC_Os01g14230OsAffx.11047.1.S1_at11/111+7977444..7978379hypothetical protein
LOC_Os01g14240OsAffx.22047.1.S1_at8/111+7981429..7981748hypothetical protein
LOC_Os01g14250OsAffx.23236.1.S1_at11/111+7985738..7987269hypothetical protein
LOC_Os01g14260OsAffx.29789.3.S1_x_at9/111+7989842..7993957hAT family dimerisation domain containing protein
LOC_Os01g14260OsAffx.29789.1.S1_x_at7/111+7989842..7993957hAT family dimerisation domain containing protein
LOC_Os01g14260OsAffx.31885.2.S1_x_at2/111+7989842..7993957hAT family dimerisation domain containing protein
LOC_Os01g14270OsAffx.22046.1.S1_at11/111+7994293..7999812F-box domain containing protein
LOC_Os01g14270OsAffx.22046.2.S1_s_at11/111+7994293..7999812F-box domain containing protein
LOC_Os01g14270OsAffx.22046.2.S1_at8/111+7994293..7999812F-box domain containing protein
LOC_Os01g14270OsAffx.22046.3.S1_x_at3/111+7994293..7999812F-box domain containing protein
LOC_Os01g14270OsAffx.22046.3.S1_at2/111+7994293..7999812F-box domain containing protein
LOC_Os01g14270Os.57198.1.S1_at2/111+7994293..7999812F-box domain containing protein
LOC_Os01g14270OsAffx.27239.2.S1_at1/111+7994293..7999812F-box domain containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.1999.1.S1_at--210--7211Chr01:7970983..7971007 (25 bp)
GTCGTCGTGCACCAGATGATGATCT
LOC_Os01g14220
OsAffx.1999.1.S1_at--116--4991Chr01:7970889..7970913 (25 bp)
GCATCCATCACGATCTGCGCTTCAT
LOC_Os01g14220
OsAffx.1999.1.S1_at--417--851Chr01:7970853..7970877 (25 bp)
ATGGCTGCGAGCTTCCACCGGGCAC
LOC_Os01g14220
OsAffx.1999.1.S1_at--875--5091Chr01:7970832..7970856 (25 bp)
GCACGGCGGACCTCGACAAGTGCCG
LOC_Os01g14220
OsAffx.1999.1.S1_at--912--8871Chr01:7970796..7970820 (25 bp)
TGAGGCGCGACGATCTGCGTTACGT
LOC_Os01g14220
OsAffx.1999.1.S1_at--169--9151Chr01:7970781..7970805 (25 bp)
TGCGTTACGTGCAGATCCACAAGCG
LOC_Os01g14220
OsAffx.1999.1.S1_at--1095--7331Chr01:7970773..7970797 (25 bp)
GTGCAGATCCACAAGCGCGACGGCG
LOC_Os01g14220
OsAffx.1999.1.S1_at--885--791Chr01:7970734..7970758 (25 bp)
ATGTGGACGCTCGATCAGCTTGCCG
LOC_Os01g14220
OsAffx.1999.1.S1_at--860--9651Chr01:7970720..7970744 (25 bp)
TCAGCTTGCCGGGACTTGGAGCTTC
LOC_Os01g14220
OsAffx.1999.1.S1_at--912--1751Chr01:7970544..7970568 (25 bp)
ACCTGCGCGCGTGCAGTGTCCTGGA
LOC_Os01g14220
OsAffx.1999.1.S1_at--334--1111Chr01:7970530..7970554 (25 bp)
AGTGTCCTGGAGTGCGAGTTCTTCG
LOC_Os01g14220
Target Sequence 
GTCGTCGTGCACCAGATGATGATCTGGTGGGTGGATCTCTCCTACGGCCTCCTCGCGGACCTCGCCTTCGACCAACTCCG
CCGCGTCGTCCCCGGCATCCATCACGATCTGCGCTTCATCCCGCTCCCCGATGGCTGCGAGCTTCCACCGGGCACGGCGG
ACCTCGACAAGTGCCGCTGCGTGGGGCTGAGGCGCGACGATCTGCGTTACGTGCAGATCCACAAGCGCGACGGCGACCCG
GCGGTCAGCATGTGGACGCTCGATCAGCTTGCCGGGACTTGGAGCTTCGACTGCGAGGCGAGCTTCAAGGCGATCTGGAA
CGACGAGGGCTACAGGGCGACCAAGCTGCCGCCGGAGGTCCCCACGGTGGCGCTCATCCACCCGGAGCACCCCGGCGAGG
TGGCCTACTTCTTCCTGCACTCGCGGGTGTTCGGCGTCGACCTGCGCGCGTGCAGTGTCCTGGAGTGCGAGTTCTTCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.1999.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis