Browse Element(s) Details


OsAffx.1999.3.S1_at

Description tigr:9629.m01398
TID=OsAffx.1999.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1421011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g14180OsAffx.23233.1.S1_at11/111+7942016..7943774expressed protein
LOC_Os01g14180OsAffx.23239.1.S1_x_at1/111+7942016..7943774expressed protein
LOC_Os01g14190OsAffx.13631.4.S1_s_at11/111+7944195..7946605hAT family dimerisation domain containing protein
LOC_Os01g14190OsAffx.22917.1.S1_x_at3/111+7944195..7946605hAT family dimerisation domain containing protein
LOC_Os01g14200NANA1+7950225..7961102AT hook motif-containing protein, putative, expressed
LOC_Os01g14210OsAffx.1999.3.S1_at11/111+7966664..7967557hypothetical protein
LOC_Os01g14220OsAffx.1999.1.S1_at11/111+7970447..7971613hypothetical protein
LOC_Os01g14220OsAffx.1999.2.S1_s_at1/111+7970447..7971613hypothetical protein
LOC_Os01g14230OsAffx.11047.1.S1_at11/111+7977444..7978379hypothetical protein
LOC_Os01g14240OsAffx.22047.1.S1_at8/111+7981429..7981748hypothetical protein
LOC_Os01g14250OsAffx.23236.1.S1_at11/111+7985738..7987269hypothetical protein
LOC_Os01g14260OsAffx.29789.3.S1_x_at9/111+7989842..7993957hAT family dimerisation domain containing protein
LOC_Os01g14260OsAffx.29789.1.S1_x_at7/111+7989842..7993957hAT family dimerisation domain containing protein
LOC_Os01g14260OsAffx.31885.2.S1_x_at2/111+7989842..7993957hAT family dimerisation domain containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.1999.3.S1_at--302--3971Chr01:7966994..7967018 (25 bp)
CGGGACGAAGCGCAGCTCACGGTGG
LOC_Os01g14210
OsAffx.1999.3.S1_at--263--9671Chr01:7967010..7967034 (25 bp)
TCACGGTGGGCGACGCTGAGATCCA
LOC_Os01g14210
OsAffx.1999.3.S1_at--274--8191Chr01:7967041..7967065 (25 bp)
GGAAGCCGTACGAGAGATCCACCCA
LOC_Os01g14210
OsAffx.1999.3.S1_at--665--6991Chr01:7967048..7967072 (25 bp)
GTACGAGAGATCCACCCACCAGATC
LOC_Os01g14210
OsAffx.1999.3.S1_at--325--6951Chr01:7967126..7967150 (25 bp)
GTAGTTGAGCTCCAGGTTGCTCCAG
LOC_Os01g14210
OsAffx.1999.3.S1_at--950--6671Chr01:7967141..7967165 (25 bp)
GTTGCTCCAGGCTCCAGAGGCAGAG
LOC_Os01g14210
OsAffx.1999.3.S1_at--343--10091Chr01:7967229..7967253 (25 bp)
TAGGCGTCGCGCGAGATGCTGGCGA
LOC_Os01g14210
OsAffx.1999.3.S1_at--829--7992Chr01:7967296..7967320 (25 bp)
GGAGGCGGGTGGACTTGTGCGTGCG
LOC_Os01g14210
OsAffx.1999.3.S1_at--842--8411Chr01:7967382..7967406 (25 bp)
GGCCGACGATGGTAGAAGCCGTCCA
LOC_Os01g14210
OsAffx.1999.3.S1_at--682--1871Chr01:7967387..7967411 (25 bp)
ACGATGGTAGAAGCCGTCCAGGACG
LOC_Os01g14210
OsAffx.1999.3.S1_at--1159--8593Chr01:8015608..8015632 (25 bp)
TGGTCGTCGATGGTCTTGCGGCGCG
NONE
Target Sequence 
CGGGACGAAGCGCAGCTCACGGTGGGCGACGCTGAGATCCAAGGCGAGGAAGCCGTACGAGAGATCCACCCACCAGATCT
CCTTGGGCCACACCACCACGCCATTGCCGCCCCATGGACGGTCGCGCGGCGGGTAGTTGAGCTCCAGGTTGCTCCAGGCT
CCAGAGGCAGAGGAGTACAGGAGCAGCGTGGCGTGGTCGGCGCCGACGACCGTGGGGTGGAGATCGGCGACGAGGTAGGC
GTCGCGCGAGATGCTGGCGAGGCAGGCGTTGCCGGGGTGGAGGATGGGGAGGCCGGGGTCGGGGAGGCGGGTGGACTTGT
GCGTGCGCGTGTCGCAGATGAAGTACGCCTTGGGGAGCAAGCCATGGCGGTGATCGCCGTCGCCGAGCGGCCGACGATGG
TAGAAGCCGTCCAGGACGGGCGGCTACGGTTCGGGCCCCTGCGTGGCGCAGAGGAGGAGGCGGCCATGGCAGTCGCCGCC
GGCGACGTAGGGGTGGTCGTCGATGGTCTTGCGGCGCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.1999.3.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis