Browse Element(s) Details


OsAffx.11047.1.S1_at

Description gb:NM_188743.1
DB_XREF= gi:34904569
GEN=B1008C01.17
TID=OsAffx.11047.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) B1008C01.17 (B1008C01.17), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1423011/11hypothetical protein
LOC_Os01g143001/11transposon protein, putative, CACTA, En/Spm sub-class
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g14200NANA1+7950225..7961102AT hook motif-containing protein, putative, expressed
LOC_Os01g14210OsAffx.1999.3.S1_at11/111+7966664..7967557hypothetical protein
LOC_Os01g14220OsAffx.1999.1.S1_at11/111+7970447..7971613hypothetical protein
LOC_Os01g14220OsAffx.1999.2.S1_s_at1/111+7970447..7971613hypothetical protein
LOC_Os01g14230OsAffx.11047.1.S1_at11/111+7977444..7978379hypothetical protein
LOC_Os01g14240OsAffx.22047.1.S1_at8/111+7981429..7981748hypothetical protein
LOC_Os01g14250OsAffx.23236.1.S1_at11/111+7985738..7987269hypothetical protein
LOC_Os01g14260OsAffx.29789.3.S1_x_at9/111+7989842..7993957hAT family dimerisation domain containing protein
LOC_Os01g14260OsAffx.29789.1.S1_x_at7/111+7989842..7993957hAT family dimerisation domain containing protein
LOC_Os01g14260OsAffx.31885.2.S1_x_at2/111+7989842..7993957hAT family dimerisation domain containing protein
LOC_Os01g14270OsAffx.22046.1.S1_at11/111+7994293..7999812F-box domain containing protein
LOC_Os01g14270OsAffx.22046.2.S1_s_at11/111+7994293..7999812F-box domain containing protein
LOC_Os01g14270OsAffx.22046.2.S1_at8/111+7994293..7999812F-box domain containing protein
LOC_Os01g14270OsAffx.22046.3.S1_x_at3/111+7994293..7999812F-box domain containing protein
LOC_Os01g14270OsAffx.22046.3.S1_at2/111+7994293..7999812F-box domain containing protein
LOC_Os01g14270Os.57198.1.S1_at2/111+7994293..7999812F-box domain containing protein
LOC_Os01g14270OsAffx.27239.2.S1_at1/111+7994293..7999812F-box domain containing protein
LOC_Os01g14280OsAffx.2002.1.S1_s_at11/111+8000882..8002018hypothetical protein
LOC_Os01g14280OsAffx.2002.2.S1_at11/111+8000882..8002018hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11047.1.S1_at--955--6371Chr01:7977887..7977911 (25 bp)
GATCCGGGATGCCAAGATTCGCTTT
LOC_Os01g14230
OsAffx.11047.1.S1_at--1092--4691Chr01:7977961..7977985 (25 bp)
GCGGCGTTTCATTCAAGGGTCTATC
LOC_Os01g14230
OsAffx.11047.1.S1_at--981--6172Chr01:7978033..7978057 (25 bp)
GGGACACGTACGCTTATCCTACGGA
LOC_Os01g14230
OsAffx.11047.1.S1_at--913--2711Chr01:7978068..7978092 (25 bp)
AAGCAGCTCGAGTGGTGCTACGTCT
LOC_Os01g14230
OsAffx.11047.1.S1_at--1045--9671Chr01:7978177..7978201 (25 bp)
TCACCGCCGTCATGTTGGCAATAGA
LOC_Os01g14230
OsAffx.11047.1.S1_at--1147--5671Chr01:7978200..7978224 (25 bp)
GACTTTACCGCAATTGGTTTTCTCG
LOC_Os01g14230
OsAffx.11047.1.S1_at--1040--7871Chr01:7978215..7978239 (25 bp)
GGTTTTCTCGAATGGCACAGCAGGA
LOC_Os01g14230
OsAffx.11047.1.S1_at--62--8052Chr01:8009018..8009042 (25 bp)
GGAGATGCCGAAGCCTCGTGGTACA
LOC_Os01g14300
OsAffx.11047.1.S1_at--1053--4671Chr01:7978278..7978302 (25 bp)
GCGGAGATCGTCACGTCGTTTGTGA
LOC_Os01g14230
OsAffx.11047.1.S1_at--840--6851Chr01:7978305..7978329 (25 bp)
GTTTGCTTGCGGTATTGGTTGTATC
LOC_Os01g14230
OsAffx.11047.1.S1_at--879--7891Chr01:7978321..7978345 (25 bp)
GGTTGTATCTACACGTTTTCTACGT
LOC_Os01g14230
Target Sequence 
GATCCGGGATGCCAAGATTCGCTTTGCGGTGGCCGTGTCGGCCGCGGTCGCGGTAGCTGGCGGCGTTGTGATCGGCGGCG
TTTCATTCAAGGGTCTATCCTACGCCGCCGTCTTCTTCGCGCTCCCTACGAACCTCTTGTACTTCCGGGACACGTACGCT
TATCCTACGGACCACATGCCGAAGCAGCTCGAGTGGTGCTACGTCTCGGTGCCTATGGCCGTCATGCTGTTGTCCCGCCT
CATGTTGGCGGCACGGCAGGCAACCACGCTGGACATCAGGCTCGTCGCCGTCACCGCCGTCATGTTGGCAATAGACTTTA
CCGCAATTGGTTTTCTCGAATGGCACAGCAGGAGGGAGATGCCGAAGCCTCGTGGTACACGTGCGAGTGCGGCGGAGATC
GTCACGTCGTTTGTGATGGTTTGCTTGCGGTATTGGTTGTATCTACACGTTTTCTACGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11047.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis