Browse Element(s) Details


OsAffx.29789.1.S1_x_at

Description tigr:9640.m02225
TID=OsAffx.29789.1
CNT=3
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hAT family dimerisation domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g2343011/11hAT family dimerisation domain containing protein
LOC_Os09g266807/11hAT family dimerisation domain containing protein
LOC_Os06g223007/11hAT family dimerisation domain containing protein
LOC_Os02g562907/11hypothetical protein
LOC_Os07g476107/11hAT family dimerisation domain containing protein
LOC_Os01g142607/11hAT family dimerisation domain containing protein
LOC_Os07g222707/11hAT family dimerisation domain containing protein
LOC_Os12g395406/11hAT family dimerisation domain containing protein
LOC_Os05g095706/11hAT family dimerisation domain containing protein
LOC_Os01g332404/11Transposable element protein, putative, MuDR
LOC_Os01g332603/11ABC-2 type transporter family protein
LOC_Os08g202901/11transposase, putative
LOC_Os12g260201/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g23374NANA12+13221389..13225196retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g23390NANA12+13228013..13228981hypothetical protein
LOC_Os12g23400NANA12+13237764..13238846hypothetical protein
LOC_Os12g23420OsAffx.31869.4.S1_x_at9/1112+13241933..13242708retrotransposon protein, putative, unclassified
LOC_Os12g23420OsAffx.31869.4.S1_at9/1112+13241933..13242708retrotransposon protein, putative, unclassified
LOC_Os12g23420OsAffx.31869.3.S1_x_at5/1112+13241933..13242708retrotransposon protein, putative, unclassified
LOC_Os12g23420OsAffx.31869.3.S1_s_at4/1112+13241933..13242708retrotransposon protein, putative, unclassified
LOC_Os12g23420OsAffx.31869.3.S1_at3/1112+13241933..13242708retrotransposon protein, putative, unclassified
LOC_Os12g23420OsAffx.31869.5.S1_x_at3/1112+13241933..13242708retrotransposon protein, putative, unclassified
LOC_Os12g23430OsAffx.29789.1.S1_x_at11/1112+13243449..13245516hAT family dimerisation domain containing protein
LOC_Os12g23430OsAffx.29789.3.S1_x_at1/1112+13243449..13245516hAT family dimerisation domain containing protein
LOC_Os12g23430OsAffx.31885.2.S1_x_at1/1112+13243449..13245516hAT family dimerisation domain containing protein
LOC_Os12g23440NANA12+13251441..13258028retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g23450OsAffx.7675.1.S1_at11/1112+13263083..13265482hypothetical protein
LOC_Os12g23460Os.50549.1.S1_at11/1112+13267650..13269173expressed protein
LOC_Os12g23460OsAffx.24340.1.S1_at1/1112+13267650..13269173expressed protein
LOC_Os12g23460OsAffx.27496.2.S1_x_at1/1112+13267650..13269173expressed protein
LOC_Os12g23470OsAffx.5075.1.S1_x_at1/1112+13270244..13271714retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0015692biological_processlead ion transport
GO:0005886cellular_componentplasma membrane
GO:0042626molecular_functionATPase activity, coupled to transmembrane movement of substances
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29789.1.S1_x_at--619--77713Chr12:13245166..13245190 (25 bp)
GGTGCTCCAAGCTCTCAACGAACTA
LOC_Os12g23430
OsAffx.29789.1.S1_x_at--253--92111Chr12:13245171..13245195 (25 bp)
TCCAAGCTCTCAACGAACTACCATT
LOC_Os12g23430
OsAffx.29789.1.S1_x_at--714--7910Chr12:13245336..13245360 (25 bp)
ATGGGTGTATGAATGGCAAGAGCCT
LOC_Os12g23430
OsAffx.29789.1.S1_x_at--563--87510Chr12:13245377..13245401 (25 bp)
TGTACGCTCAGTGGCAAACAACATC
LOC_Os12g23430
OsAffx.29789.1.S1_x_at--550--75311Chr12:13245387..13245411 (25 bp)
GTGGCAAACAACATCATCATGGACT
LOC_Os12g23430
OsAffx.29789.1.S1_x_at--298--2511Chr12:13245396..13245420 (25 bp)
AACATCATCATGGACTGGTCAAAGA
LOC_Os12g23430
OsAffx.29789.1.S1_x_at--1023--1951Chr12:13245409..13245433 (25 bp)
ACTGGTCAAAGATGGGAGGCATACA
LOC_Os12g23430
OsAffx.29789.1.S1_x_at--925--76711Chr12:13245439..13245463 (25 bp)
GGGTTGCTACATTCACATGGCTTGA
LOC_Os12g23430
OsAffx.29789.1.S1_x_at--460--48511Chr12:13245444..13245468 (25 bp)
GCTACATTCACATGGCTTGATGCTC
LOC_Os12g23430
OsAffx.29789.1.S1_x_at--862--2113Chr12:13245453..13245477 (25 bp)
ACATGGCTTGATGCTCATGTCCATA
LOC_Os12g23430
OsAffx.29789.1.S1_x_at--1103--6331Chr12:13245462..13245486 (25 bp)
GATGCTCATGTCCATAGAGGAGTAC
LOC_Os12g23430
Target Sequence 
GGTGCTCCAAGCTCTCAACGAACTACCATTGCANCGNGAGNCCNACAACAGCAACAANNNNNTGACATACAACAGGATAG
CTCNAGCTCATTCAGTGCCTCTAGCNTTGAAAGTGGCTATCCAACGTATGTGTANAACCGTCCNCAAGCTTCTGATTATC
CTGCNNCTACATGGGTGTATGAATGGCAAGAGCCTNNNNNNNNNNNNCAATTGTACGCTCAGTGGCAAACAACATCATCA
TGGACTGGTCAAAGATGGGAGGCATACAAAGCGGGGTTGCTACATTCACATGGCTTGATGCTCATGTCCATAGAGGAGTA
C

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29789.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis