Browse Element(s) Details


OsAffx.24340.1.S1_at

Description tigr:9630.m01926
TID=OsAffx.24340.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to AY143962 At3g05050T12H1_1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2014011/11Protein kinase domain containing protein
LOC_Os12g234601/11expressed protein
LOC_Os12g235141/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g20100OsAffx.1646.1.S1_x_at1/112+11834516..11840838retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g20110Os.20978.1.S1_at1/112+11842658..11853298retrotransposon protein, putative, unclassified
LOC_Os02g20110OsAffx.7789.1.S1_x_at1/112+11842658..11853298retrotransposon protein, putative, unclassified
LOC_Os02g20120Os.27066.1.A1_x_at1/112+11854049..11857200hypothetical protein
LOC_Os02g20130OsAffx.24339.1.S1_at11/112+11860593..11860978hypothetical protein
LOC_Os02g20140OsAffx.24340.1.S1_at11/112+11862409..11869636Protein kinase domain containing protein
LOC_Os02g20140Os.5644.1.S1_at1/112+11862409..11869636Protein kinase domain containing protein
LOC_Os02g20150OsAffx.24341.1.S1_at11/112+11875272..11876018hypothetical protein
LOC_Os02g20160OsAffx.12127.1.S1_at10/112+11876578..11880148pentatricopeptide, putative
LOC_Os02g20170Os.11772.1.S1_at11/112+11882302..11885739expressed protein
LOC_Os02g20180NANA2+11888403..11889131hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24340.1.S1_at--922--71Chr02:11865924..11865948 (25 bp)
ATTGCCGTGCCATCTGTCGGAGCTT
LOC_Os02g20140
OsAffx.24340.1.S1_at--148--9453Chr12:13296731..13296764 (24 bp)
TCGGAGCTTCCGGTTGTGTACAAGG
LOC_Os12g23514
OsAffx.24340.1.S1_at--486--8891Chr02:11865876..11865900 (25 bp)
TGAGGTTGCTGCTTCCCATGATGGA
LOC_Os02g20140
OsAffx.24340.1.S1_at--357--4551Chr02:11865722..11865746 (25 bp)
GCCCAAACTGAGAGAGCGGTCACAT
LOC_Os02g20140
OsAffx.24340.1.S1_at--504--2431Chr02:11865645..11865669 (25 bp)
AAAATCTCAACAGTAGTCCTAGTAA
LOC_Os02g20140
OsAffx.24340.1.S1_at--998--1871Chr02:11864647..11864671 (25 bp)
ACGATTTTCAGATGGACAGGTTCAG
LOC_Os02g20140
OsAffx.24340.1.S1_at--153--9891Chr02:11864566..11864590 (25 bp)
TACTTACAGCCCAGACAATGATCAT
LOC_Os02g20140
OsAffx.24340.1.S1_at--278--1751Chr02:11862494..11862518 (25 bp)
ACCTTTGGACACTAGGGATCGTGCT
LOC_Os02g20140
OsAffx.24340.1.S1_at--709--7951Chr02:11862479..11862503 (25 bp)
GGATCGTGCTTGTGTACGTCGCAAA
LOC_Os02g20140
OsAffx.24340.1.S1_at--869--2431Chr02:11862457..11862481 (25 bp)
AAAAGGCCCTCTAGCATTCTGGATT
LOC_Os02g20140
OsAffx.24340.1.S1_at--411--111Chr02:11862442..11862466 (25 bp)
ATTCTGGATTCCTGGCTGTTCCATG
LOC_Os02g20140
Target Sequence 
ATTGCCGTGCCATCTGTCGGAGCTTCCGGTTGTGTACAAGGAGGAGGATGAGGTTGCTGCTTCCCATGATGGAAGGAAGC
CCAAACTGAGAGAGCGGTCACATAAGCGAAGAGACAACAAGCCGAAAGCTGAGGAGCAGCATAAAGATAAGGAACAAAAT
CTCAACAGTAGTCCTAGTAACAAAGAGGAGAAGATTATGGAGGATACAAAAAAATCAGCCCAAGATTCAAAACGATTTTC
AGATGGACAGGTTCAGGAGGTGTTCCCCAAGGGGTCACCTGCACCTCAAGATCAGCAGGTGCCAAGAACAAATACTTACA
GCCCAGACAATGATCATCACAAGAATCACAAGGTGGTCATCTTCAACCACAACCTTTGGACACTAGGGATCGTGCTTGTG
TACGTCGCAAAAGGCCCTCTAGCATTCTGGATTCCTGGCTGTTCCATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24340.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis