Browse Element(s) Details


Os.11772.1.S1_at

Description gb:AK059764.1
DB_XREF= gi:32969782
TID=Os.11772.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.11772 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023139M10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-203-G01, full insert sequence.
FL= gb:AK059764.1 gb:AK099304.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2017011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g20130OsAffx.24339.1.S1_at11/112+11860593..11860978hypothetical protein
LOC_Os02g20140OsAffx.24340.1.S1_at11/112+11862409..11869636Protein kinase domain containing protein
LOC_Os02g20140Os.5644.1.S1_at1/112+11862409..11869636Protein kinase domain containing protein
LOC_Os02g20150OsAffx.24341.1.S1_at11/112+11875272..11876018hypothetical protein
LOC_Os02g20160OsAffx.12127.1.S1_at10/112+11876578..11880148pentatricopeptide, putative
LOC_Os02g20170Os.11772.1.S1_at11/112+11882302..11885739expressed protein
LOC_Os02g20180NANA2+11888403..11889131hypothetical protein
LOC_Os02g20190OsAffx.24342.1.S1_at10/112+11895621..11896751Leucine Rich Repeat family protein
LOC_Os02g20200Os.45957.4.S1_x_at4/112+11897417..11902222retrotransposon protein, putative, unclassified
LOC_Os02g20200Os.45957.3.S1_x_at2/112+11897417..11902222retrotransposon protein, putative, unclassified
LOC_Os02g20210OsAffx.24343.1.S1_at11/112+11902743..11904931NB-ARC domain containing protein
LOC_Os02g20220NANA2+11908864..11911908retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0009414biological_processresponse to water deprivation
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11772.1.S1_at--905--5491Chr02:11883245..11883269 (25 bp)
GAACACTGCCTTCAAAGACTTGGAA
LOC_Os02g20170
Os.11772.1.S1_at--903--5291Chr02:11882758..11883247 (25 bp)
GAAGGCAAGCTCTGATTCTAATCTT
LOC_Os02g20170
Os.11772.1.S1_at--1023--10251Chr02:11882682..11882706 (25 bp)
TTTGTACAGCACCTGCTTGTCTCTA
LOC_Os02g20170
Os.11772.1.S1_at--33--7171Chr02:11882664..11882688 (25 bp)
GTCTCTACCCTTTTTGATGACTAGC
LOC_Os02g20170
Os.11772.1.S1_at--917--2431Chr02:11882631..11882655 (25 bp)
AAAAGAGCAGCTCCGTGCACTGGAA
LOC_Os02g20170
Os.11772.1.S1_at--622--1951Chr02:11882613..11882637 (25 bp)
ACTGGAATCTCGAGTGGGCCTTTTG
LOC_Os02g20170
Os.11772.1.S1_at--29--5391Chr02:11882540..11882564 (25 bp)
GAAGCAGTTCATCCAACCGGAGGCT
LOC_Os02g20170
Os.11772.1.S1_at--1016--8571Chr02:11882516..11882540 (25 bp)
TGGTTCCTGATCCTTTCGACATTGA
LOC_Os02g20170
Os.11772.1.S1_at--43--6311Chr02:11882490..11882514 (25 bp)
GATGAACCGATGTGGCTGGCCTCTT
LOC_Os02g20170
Os.11772.1.S1_at--692--4711Chr02:11882476..11882500 (25 bp)
GCTGGCCTCTTACTTGTCATGGAAG
LOC_Os02g20170
Os.11772.1.S1_at--423--8311Chr02:11882409..11882433 (25 bp)
GGCTATCGACTAGCGTTACTGTATT
LOC_Os02g20170
Target Sequence 
GAACACTGCCTTCAAAGACTTGGAAGGCAAGCTCTGATTCTAATCTTAGTCAGGAAGAAAGGGAGAGAAGGCGGAGGCGA
GCTGCAGTGAGATCATCTTTTGTACAGCACCTGCTTGTCTCTACCCTTTTTGATGACTAGCAGAAGAAAAAAAGAGCAGC
TCCGTGCACTGGAATCTCGAGTGGGCCTTTTGTCCACACATTTCTGGATGAATGATGAAGTAAAGCATCTTCCAAATCCT
GAAGCAGTTCATCCAACCGGAGGCTGGTTCCTGATCCTTTCGACATTGATGATGAACCGATGTGGCTGGCCTCTTACTTG
TCATGGAAGCAGTTCTGAACATTTATGTTCGAAATCCAATTCAGATTGCTAGGCTATCGACTAGCGTTACTGTATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11772.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis