Browse Element(s) Details


OsAffx.24343.1.S1_at

Description tigr:9630.m01933
TID=OsAffx.24343.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=NB-ARC domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2021011/11NB-ARC domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g20160OsAffx.12127.1.S1_at10/112+11876578..11880148pentatricopeptide, putative
LOC_Os02g20170Os.11772.1.S1_at11/112+11882302..11885739expressed protein
LOC_Os02g20180NANA2+11888403..11889131hypothetical protein
LOC_Os02g20190OsAffx.24342.1.S1_at10/112+11895621..11896751Leucine Rich Repeat family protein
LOC_Os02g20200Os.45957.4.S1_x_at4/112+11897417..11902222retrotransposon protein, putative, unclassified
LOC_Os02g20200Os.45957.3.S1_x_at2/112+11897417..11902222retrotransposon protein, putative, unclassified
LOC_Os02g20210OsAffx.24343.1.S1_at11/112+11902743..11904931NB-ARC domain containing protein
LOC_Os02g20220NANA2+11908864..11911908retrotransposon protein, putative, unclassified
LOC_Os02g20230NANA2+11912779..11913372transposon protein, putative, unclassified
LOC_Os02g20240NANA2+11916547..11917740retrotransposon protein, putative, unclassified
LOC_Os02g20250Os.53142.1.S1_at3/112+11922454..11926516retrotransposon protein, putative, unclassified
LOC_Os02g20250OsAffx.22492.1.S1_x_at1/112+11922454..11926516retrotransposon protein, putative, unclassified
LOC_Os02g20250OsAffx.22492.1.S1_at1/112+11922454..11926516retrotransposon protein, putative, unclassified
LOC_Os02g20260Os.31312.2.S1_x_at4/112+11927142..11930326retrotransposon protein, putative, unclassified
LOC_Os02g20260Os.31312.5.S1_x_at4/112+11927142..11930326retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24343.1.S1_at--462--9911Chr02:11903319..11903343 (25 bp)
TACTCGCCACTTGTTCATATCATAC
LOC_Os02g20210
OsAffx.24343.1.S1_at--1150--5371Chr02:11903262..11903286 (25 bp)
GAAGAAGCAATCTCCAACACTCCAA
LOC_Os02g20210
OsAffx.24343.1.S1_at--735--331Chr02:11903227..11903251 (25 bp)
ATACAGATCCCTACACTTATGTCTC
LOC_Os02g20210
OsAffx.24343.1.S1_at--429--8711Chr02:11903208..11903232 (25 bp)
TGTCTCTCCACCACGGTTATCAAAG
LOC_Os02g20210
OsAffx.24343.1.S1_at--939--9931Chr02:11903173..11903197 (25 bp)
TACGGGCAATGCAACTCTGTCGATT
LOC_Os02g20210
OsAffx.24343.1.S1_at--16--5771Chr02:11903027..11903051 (25 bp)
GACGTTTCTGATTGTGACTCTCTAT
LOC_Os02g20210
OsAffx.24343.1.S1_at--210--9551Chr02:11903007..11903031 (25 bp)
TCTATGCCGGCTTCCAAATGCTATG
LOC_Os02g20210
OsAffx.24343.1.S1_at--470--10651Chr02:11902966..11902990 (25 bp)
TTCGCCATATCTACACTGGTGGATG
LOC_Os02g20210
OsAffx.24343.1.S1_at--169--9591Chr02:11902937..11902961 (25 bp)
TCATTGGAATGCATGCCTCCTGACC
LOC_Os02g20210
OsAffx.24343.1.S1_at--560--7491Chr02:11902871..11902895 (25 bp)
GTGGGTTCTAGCTCTAGTTGCAGCA
LOC_Os02g20210
OsAffx.24343.1.S1_at--539--6671Chr02:11902855..11902879 (25 bp)
GTTGCAGCAATGTTTCCGAACTCGA
LOC_Os02g20210
Target Sequence 
TACTCGCCACTTGTTCATATCATACCGAGAAATTCACACTCATCTGGATGGTATGCTGAAGAAGCAATCTCCAACACTCC
AAACGTTGTTATATACAGATCCCTACACTTATGTCTCTCCACCACGGTTATCAAAGCACAATTCTTTACGGGCAATGCAA
CTCTGTCGATTGAGAAAACTTCCAATCAGGCCAAGGCACTTGCAATACATTAGGTATCTTAACTTTTCCAACAATTGGTG
GATCAAAAAACTTCCTGAAGAAATAAGTTTACTATATAATCTACTGACAATGGACGTTTCTGATTGTGACTCTCTATGCC
GGCTTCCAAATGCTATGAAGTATATGAAAAACCTTCGCCATATCTACACTGGTGGATGTGAATCATTGGAATGCATGCCT
CCTGACCTTGGACAACTGACTTCTCTACAGACATTAACCTTTTTTGTGGTGGGTTCTAGCTCTAGTTGCAGCAATGTTTC
CGAACTCGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24343.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis