Browse Element(s) Details


OsAffx.24342.1.S1_at

Description tigr:9630.m01931
TID=OsAffx.24342.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Leucine Rich Repeat, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2019010/11Leucine Rich Repeat family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g20150OsAffx.24341.1.S1_at11/112+11875272..11876018hypothetical protein
LOC_Os02g20160OsAffx.12127.1.S1_at10/112+11876578..11880148pentatricopeptide, putative
LOC_Os02g20170Os.11772.1.S1_at11/112+11882302..11885739expressed protein
LOC_Os02g20180NANA2+11888403..11889131hypothetical protein
LOC_Os02g20190OsAffx.24342.1.S1_at10/112+11895621..11896751Leucine Rich Repeat family protein
LOC_Os02g20200Os.45957.4.S1_x_at4/112+11897417..11902222retrotransposon protein, putative, unclassified
LOC_Os02g20200Os.45957.3.S1_x_at2/112+11897417..11902222retrotransposon protein, putative, unclassified
LOC_Os02g20210OsAffx.24343.1.S1_at11/112+11902743..11904931NB-ARC domain containing protein
LOC_Os02g20220NANA2+11908864..11911908retrotransposon protein, putative, unclassified
LOC_Os02g20230NANA2+11912779..11913372transposon protein, putative, unclassified
LOC_Os02g20240NANA2+11916547..11917740retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24342.1.S1_at--1016--2331Chr02:11896643..11896667 (25 bp)
AAAGAAGAGCTGTCCTTTCCAGTGC
LOC_Os02g20190
OsAffx.24342.1.S1_at--847--5331Chr02:11896590..11896614 (25 bp)
GAAGTTGACGAGTCTGCCTGGACCA
LOC_Os02g20190
OsAffx.24342.1.S1_at--437--2311NONE
AAAGGGTGTCCTAACTTCCAGTGCT
NONE
OsAffx.24342.1.S1_at--272--10191Chr02:11895941..11895965 (25 bp)
TATTTACCTTGCCTAGATACCCTAT
LOC_Os02g20190
OsAffx.24342.1.S1_at--355--7911Chr02:11895908..11895932 (25 bp)
GGTTCCGATAAGTTGGCCATGCTTC
LOC_Os02g20190
OsAffx.24342.1.S1_at--1114--171Chr02:11895851..11895875 (25 bp)
ATTTATCACTGTCCAGAGCTTCGCT
LOC_Os02g20190
OsAffx.24342.1.S1_at--1123--5911Chr02:11895836..11895860 (25 bp)
GAGCTTCGCTCCATATCAGGGAATT
LOC_Os02g20190
OsAffx.24342.1.S1_at--997--4751Chr02:11895781..11895805 (25 bp)
GCTGCAATAAGTTGGACTCGCCTGA
LOC_Os02g20190
OsAffx.24342.1.S1_at--909--2371Chr02:11895710..11895734 (25 bp)
AAACGTCTGACATCATTACCTGGTA
LOC_Os02g20190
OsAffx.24342.1.S1_at--742--3611Chr02:11895683..11895707 (25 bp)
CTTGGGAATTACTCTGCTCTCAGGA
LOC_Os02g20190
OsAffx.24342.1.S1_at--909--4791Chr02:11895668..11895692 (25 bp)
GCTCTCAGGAGGGTTCTCGTCAAAT
LOC_Os02g20190
Target Sequence 
AAAGAAGAGCTGTCCTTTCCAGTGCTTGAGGAGATTGATATTAGGAACTGTCCGAAGTTGACGAGTCTGCCTGGACCACC
AAAGGGTGTCCTAACTTCCAGTGCTTATGGGGGAGGGGGACAGGTGATACAGAGTCCGATTAATTTACAGGTGGAGCATG
GCAATGACCTCACGCCCACAAGTGTCTCAGAGAAGCCAGGAAATAACTATTTACCTTGCCTAGATACCCTATTCATAATG
GGTTCCGATAAGTTGGCCATGCTTCGAAATCTGCCTCCATCTCTCAAGAACTTGTCAATTTATCACTGTCCAGAGCTTCG
CTCCATATCAGGGAATTTGGATCAACTCGTGGACGTGAGTATTGGGGGCTGCAATAAGTTGGACTCGCCTGATTGGGGGA
ACCTACCTGCATTAGAAGACTTTGGACTTTTGAATTGCAAACGTCTGACATCATTACCTGGTAATCTTGGGAATTACTCT
GCTCTCAGGAGGGTTCTCGTCAAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24342.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis