Browse Element(s) Details


OsAffx.22492.1.S1_x_at

Description gb:NM_186298.1
DB_XREF= gi:34899681
GEN=OSJNBa0077B15.6
TID=OsAffx.22492.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) OSJNBa0077B15.6 (OSJNBa0077B15.6), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0519911/11
LOC_Os02g179403/11oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os01g123601/11retrotransposon protein, putative, unclassified, expressed
LOC_Os11g094201/11retrotransposon protein, putative, unclassified
LOC_Os09g400401/11retrotransposon protein, putative, unclassified
LOC_Os06g421901/11retrotransposon protein, putative, unclassified
LOC_Os06g499501/11retrotransposon protein, putative, unclassified
LOC_Os11g030901/11retrotransposon protein, putative, unclassified
LOC_Os04g184101/11retrotransposon protein, putative, unclassified
LOC_Os02g566501/11retrotransposon protein, putative, unclassified
LOC_Os04g555301/11retrotransposon protein, putative, unclassified
LOC_Os04g394001/11retrotransposon protein, putative, unclassified
LOC_Os09g086401/11retrotransposon protein, putative, unclassified
LOC_Os07g156201/11retrotransposon protein, putative, unclassified
LOC_Os09g037101/11retrotransposon protein, putative, unclassified
LOC_Os04g035601/11retrotransposon protein, putative, unclassified
LOC_Os04g027101/11retrotransposon protein, putative, unclassified
LOC_Os11g092401/11retrotransposon protein, putative, unclassified
LOC_Os10g361501/11retrotransposon protein, putative, unclassified
LOC_Os03g538101/11retrotransposon protein, putative, unclassified
LOC_Os01g546601/11retrotransposon protein, putative, unclassified
LOC_Os05g244601/11retrotransposon protein, putative, unclassified
LOC_Os06g178201/11retrotransposon protein, putative, unclassified
LOC_Os01g370701/11retrotransposon protein, putative, unclassified
LOC_Os02g013901/11retrotransposon protein, putative, unclassified
LOC_Os04g102801/11retrotransposon protein, putative, unclassified
LOC_Os04g098401/11retrotransposon protein, putative, unclassified
LOC_Os04g592901/11retrotransposon protein, putative, unclassified
LOC_Os06g480901/11retrotransposon protein, putative, unclassified
LOC_Os01g479801/11retrotransposon protein, putative, unclassified
LOC_Os02g202501/11retrotransposon protein, putative, unclassified
LOC_Os09g400501/11retrotransposon protein, putative, unclassified
LOC_Os08g145501/11retrotransposon protein, putative, unclassified
LOC_Os08g335701/11retrotransposon protein, putative, unclassified
LOC_Os04g460791/11phagocytosis and cell motility protein ELMO1, putative, expressed
LOC_Os06g248101/11retrotransposon protein, putative, unclassified
LOC_Os12g283601/11retrotransposon protein, putative, unclassified
LOC_Os04g538701/11retrotransposon protein, putative, unclassified
LOC_Os09g040701/11retrotransposon protein, putative, unclassified
LOC_Os05g073401/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g05180OsAffx.28281.1.S1_x_at11/117+2309718..2310212SKP1-like protein 1A, putative
LOC_Os07g05180OsAffx.28281.1.S1_at11/117+2309718..2310212SKP1-like protein 1A, putative
LOC_Os07g05190Os.32680.1.S1_at11/117+2311700..2317263leucine-rich repeat family protein, putative, expressed
LOC_Os07g05199OsAffx.22492.1.S1_x_at11/117+2329852..2330385NA
LOC_Os07g05199OsAffx.22492.1.S1_at11/117+2329852..2330385NA
LOC_Os07g05210OsAffx.12617.1.S1_at1/117+2337084..2337482hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0009813biological_processflavonoid biosynthesis
GO:0010261biological_processorgan senescence (sensu Magnoliophyta)
GO:0016682molecular_functionoxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor
GO:0016706molecular_functionoxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.22492.1.S1_x_at--1107--4991Chr07:2329866..2329890 (25 bp)
GCATGTGAGGACACCCATCCGTCGA
LOC_Os07g05199
OsAffx.22492.1.S1_x_at--376--8871Chr07:2329871..2329895 (25 bp)
TGAGGACACCCATCCGTCGAGCCGA
LOC_Os07g05199
OsAffx.22492.1.S1_x_at--256--7212Chr09:14348287..14348309 (23 bp)
GTCGAGCCGACCGTGGTAAAGCTTT
NONE
OsAffx.22492.1.S1_x_at--235--4513Chr09:14348290..14348314 (25 bp)
GCCGACCGTGGTAAAGCTTTCATCA
NONE
OsAffx.22492.1.S1_x_at--899--78340Chr12:16770712..16771123 (25 bp)
GGTAAAGCTTTCATCAAGCTCTGCT
LOC_Os12g28360
OsAffx.22492.1.S1_x_at--884--2693Chr09:14348394..14348417 (24 bp)
AAGCTCTGCTCCTGCTATGAGATTG
NONE
OsAffx.22492.1.S1_x_at--918--4272Chr07:2330004..2330028 (25 bp)
CCTGCTATGAGATTGATGAGTTGCT
LOC_Os07g05199
OsAffx.22492.1.S1_x_at--500--8871Chr07:2330017..2330041 (25 bp)
TGATGAGTTGCTTCACATGTCCGTT
LOC_Os07g05199
OsAffx.22492.1.S1_x_at--1078--8892Chr09:14348428..14348449 (22 bp)
TGAGTTGCTTCACATGTCCGTTCTC
NONE
OsAffx.22492.1.S1_x_at--545--8692Chr09:14348439..14348463 (25 bp)
TGTCCGTTCTCCCAAATACGTTGAA
NONE
OsAffx.22492.1.S1_x_at--212--3432Chr09:14348443..14348466 (24 bp)
CGTTCTCCCAAATACGTTGAACTCG
NONE
Target Sequence 
GCATGTGAGGACACCCATCCGTCGAGCCGACCGTGGTAAAGCTTTCATCAAGCTCTGCTCCTGCTATGAGATTGATGAGT
TGCTTCACATGTCCGTTCTCCCAAATACGTTGAACTCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.22492.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis