Browse Element(s) Details


OsAffx.22044.1.S1_at

Description gb:NM_188751.1
DB_XREF= gi:34904585
GEN=B1008C01.26
TID=OsAffx.22044.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) B1008C01.26 (B1008C01.26), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1431011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g14260OsAffx.29789.3.S1_x_at9/111+7989842..7993957hAT family dimerisation domain containing protein
LOC_Os01g14260OsAffx.29789.1.S1_x_at7/111+7989842..7993957hAT family dimerisation domain containing protein
LOC_Os01g14260OsAffx.31885.2.S1_x_at2/111+7989842..7993957hAT family dimerisation domain containing protein
LOC_Os01g14270OsAffx.22046.1.S1_at11/111+7994293..7999812F-box domain containing protein
LOC_Os01g14270OsAffx.22046.2.S1_s_at11/111+7994293..7999812F-box domain containing protein
LOC_Os01g14270OsAffx.22046.2.S1_at8/111+7994293..7999812F-box domain containing protein
LOC_Os01g14270OsAffx.22046.3.S1_x_at3/111+7994293..7999812F-box domain containing protein
LOC_Os01g14270OsAffx.22046.3.S1_at2/111+7994293..7999812F-box domain containing protein
LOC_Os01g14270Os.57198.1.S1_at2/111+7994293..7999812F-box domain containing protein
LOC_Os01g14270OsAffx.27239.2.S1_at1/111+7994293..7999812F-box domain containing protein
LOC_Os01g14280OsAffx.2002.1.S1_s_at11/111+8000882..8002018hypothetical protein
LOC_Os01g14280OsAffx.2002.2.S1_at11/111+8000882..8002018hypothetical protein
LOC_Os01g14290OsAffx.22940.2.S1_s_at11/111+8003677..8006140hypothetical protein
LOC_Os01g14290OsAffx.22940.1.S1_s_at11/111+8003677..8006140hypothetical protein
LOC_Os01g14290OsAffx.22940.5.S1_x_at10/111+8003677..8006140hypothetical protein
LOC_Os01g14290OsAffx.22940.3.S1_x_at9/111+8003677..8006140hypothetical protein
LOC_Os01g14290OsAffx.22940.5.S1_at9/111+8003677..8006140hypothetical protein
LOC_Os01g14290OsAffx.22940.2.S1_at6/111+8003677..8006140hypothetical protein
LOC_Os01g14290Os.35344.3.S1_x_at6/111+8003677..8006140hypothetical protein
LOC_Os01g14290Os.35344.18.S1_x_at5/111+8003677..8006140hypothetical protein
LOC_Os01g14290OsAffx.31552.2.S1_at1/111+8003677..8006140hypothetical protein
LOC_Os01g14300OsAffx.9860.1.S1_x_at2/111+8008839..8010609transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g14300OsAffx.11047.1.S1_at1/111+8008839..8010609transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g14310OsAffx.22044.1.S1_at11/111+8013354..8015837hypothetical protein
LOC_Os01g14320OsAffx.23239.1.S1_x_at11/111+8020589..8021737hypothetical protein
LOC_Os01g14330OsAffx.9859.1.S1_at11/111+8027686..8028573hypothetical protein
LOC_Os01g14340OsAffx.23240.1.S1_x_at10/111+8029678..8031824hypothetical protein
LOC_Os01g14340OsAffx.23240.2.S1_at1/111+8029678..8031824hypothetical protein
LOC_Os01g14350OsAffx.23240.1.S1_x_at6/111+8034696..8036492hypothetical protein
LOC_Os01g14350OsAffx.23240.2.S1_at1/111+8034696..8036492hypothetical protein
LOC_Os01g14360NANA1+8037758..8038012hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.22044.1.S1_at--4--4111Chr01:8015148..8015172 (25 bp)
CGACATCAGCGCGAGACGTCAGAAT
LOC_Os01g14310
OsAffx.22044.1.S1_at--841--5991Chr01:8015136..8015160 (25 bp)
GAGACGTCAGAATCTGCGCTTCGTC
LOC_Os01g14310
OsAffx.22044.1.S1_at--113--8911Chr01:8015073..8015097 (25 bp)
TGACCTCGATAAGCGCCGGTGCGTT
LOC_Os01g14310
OsAffx.22044.1.S1_at--438--10331Chr01:8015045..8015069 (25 bp)
TTTAGAGGCGACGATCTCCGGTACA
LOC_Os01g14310
OsAffx.22044.1.S1_at--380--5751Chr01:8014997..8015021 (25 bp)
GACGGCAAACCGGTGGTCAGCATGT
LOC_Os01g14310
OsAffx.22044.1.S1_at--435--3971Chr01:8014950..8014974 (25 bp)
CGGGACTTGGCGTCTCGACTGTCAG
LOC_Os01g14310
OsAffx.22044.1.S1_at--818--8731Chr01:8014931..8014955 (25 bp)
TGTCAGCCGCTCGTCAAGGATATCT
LOC_Os01g14310
OsAffx.22044.1.S1_at--1136--3931Chr01:8014858..8014882 (25 bp)
CGGTGGCGTTCATACACCCGGAGCT
LOC_Os01g14310
OsAffx.22044.1.S1_at--58--2591Chr01:8014826..8014850 (25 bp)
AACGTGGCCTACTTCTTCATGCGCT
LOC_Os01g14310
OsAffx.22044.1.S1_at--884--3871Chr01:8014781..8014805 (25 bp)
CTGTACACGCGCAAGGTCCTGGAGT
LOC_Os01g14310
OsAffx.22044.1.S1_at--158--111Chr01:8014707..8014731 (25 bp)
ATTCGTTCGTGCTTGGGCTTGCCCA
LOC_Os01g14310
Target Sequence 
CGACATCAGCGCGAGACGTCAGAATCTGCGCTTCGTCCCGCTCCCTCCGGATTGCGAGCTGCCGCCGGGCACGCCTGACC
TCGATAAGCGCCGGTGCGTTGGGTTTAGAGGCGACGATCTCCGGTACATGGGGATCCACGAGCGCGAGTACGACGGCAAA
CCGGTGGTCAGCATGTGGACGCTGGTCGATCAGGATGCCGGGACTTGGCGTCTCGACTGTCAGCCGCTCGTCAAGGATAT
CTGGAACGACGAGGGCTACAAGGCGACCAAGCTGCCGCGGGAGATCCCCACGGTGGCGTTCATACACCCGGAGCTCCCCG
GCAACGTGGCCTACTTCTTCATGCGCTCGCGGCTGTTCGGCGTCAACCTGTACACGCGCAAGGTCCTGGAGTGGCAGTTC
TTCGCGATGCTGAACCCGCCGATGCGTTACCACTCGTCCCGATTCGTTCGTGCTTGGGCTTGCCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.22044.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis