Browse Element(s) Details


OsAffx.23240.1.S1_x_at

Description gb:NM_188756.1
DB_XREF= gi:34904595
GEN=OSJNBa0004G10.9
TID=OsAffx.23240.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) OSJNBa0004G10.9 (OSJNBa0004G10.9), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1434010/11hypothetical protein
LOC_Os01g143506/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g14290OsAffx.22940.2.S1_s_at11/111+8003677..8006140hypothetical protein
LOC_Os01g14290OsAffx.22940.1.S1_s_at11/111+8003677..8006140hypothetical protein
LOC_Os01g14290OsAffx.22940.5.S1_x_at10/111+8003677..8006140hypothetical protein
LOC_Os01g14290OsAffx.22940.3.S1_x_at9/111+8003677..8006140hypothetical protein
LOC_Os01g14290OsAffx.22940.5.S1_at9/111+8003677..8006140hypothetical protein
LOC_Os01g14290OsAffx.22940.2.S1_at6/111+8003677..8006140hypothetical protein
LOC_Os01g14290Os.35344.3.S1_x_at6/111+8003677..8006140hypothetical protein
LOC_Os01g14290Os.35344.18.S1_x_at5/111+8003677..8006140hypothetical protein
LOC_Os01g14290OsAffx.31552.2.S1_at1/111+8003677..8006140hypothetical protein
LOC_Os01g14300OsAffx.9860.1.S1_x_at2/111+8008839..8010609transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g14300OsAffx.11047.1.S1_at1/111+8008839..8010609transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g14310OsAffx.22044.1.S1_at11/111+8013354..8015837hypothetical protein
LOC_Os01g14320OsAffx.23239.1.S1_x_at11/111+8020589..8021737hypothetical protein
LOC_Os01g14330OsAffx.9859.1.S1_at11/111+8027686..8028573hypothetical protein
LOC_Os01g14340OsAffx.23240.1.S1_x_at10/111+8029678..8031824hypothetical protein
LOC_Os01g14340OsAffx.23240.2.S1_at1/111+8029678..8031824hypothetical protein
LOC_Os01g14350OsAffx.23240.1.S1_x_at6/111+8034696..8036492hypothetical protein
LOC_Os01g14350OsAffx.23240.2.S1_at1/111+8034696..8036492hypothetical protein
LOC_Os01g14360NANA1+8037758..8038012hypothetical protein
LOC_Os01g14370Os.15122.2.S1_x_at11/111+8044185..8052384TAZ zinc finger family protein, expressed
LOC_Os01g14370Os.15122.1.S1_a_at11/111+8044185..8052384TAZ zinc finger family protein, expressed
LOC_Os01g14370Os.15122.1.S1_at11/111+8044185..8052384TAZ zinc finger family protein, expressed
LOC_Os01g14380NANA1+8054525..8054737hypothetical protein
LOC_Os01g14390OsAffx.23241.1.S1_at11/111+8055586..8056785hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23240.1.S1_x_at--363--5373Chr03:30610155..30610187 (25 bp)
GAAGACCATGATGCCGCGGCGCGTT
NONE
OsAffx.23240.1.S1_x_at--161--2932Chr01:8035457..8035481 (25 bp)
AAGGAGCTCGGCGTGGTGTTCTTCT
LOC_Os01g14350
OsAffx.23240.1.S1_x_at--1062--8153Chr03:30610065..30610089 (25 bp)
GGAACTCGTGGATGTTCGCCGTCGA
NONE
OsAffx.23240.1.S1_x_at--120--7112Chr01:8035388..8035412 (25 bp)
GTCACCAGAATCGTGCTCGAGTGCA
LOC_Os01g14350
OsAffx.23240.1.S1_x_at--1008--2732Chr01:8035364..8035388 (25 bp)
AAGAAGTACAAGATGCCCCAGCTGC
LOC_Os01g14350
OsAffx.23240.1.S1_x_at--39--10852Chr01:8035305..8035329 (25 bp)
TTGGGAGCTGCCACATTCGATCTGC
LOC_Os01g14350
OsAffx.23240.1.S1_x_at--407--5472Chr01:8034637..8034661 (25 bp)
GAACTGCTGTCAACCACTGGAAGGC
NONE
OsAffx.23240.1.S1_x_at--860--8172Chr01:8034590..8034614 (25 bp)
GGAACTGAGGAATGCCACTGCTTTT
NONE
OsAffx.23240.1.S1_x_at--202--4393Chr03:31862503..31863014 (25 bp)
GCCACTGCTTTTCCTAAGTACTTGT
NONE
OsAffx.23240.1.S1_x_at--1083--2831NONE
AAGTACTTGTCATTTGTCATTGTCA
NONE
OsAffx.23240.1.S1_x_at--794--2112Chr01:8034368..8034392 (25 bp)
ACATGTCTCCATGGACGGTTCAAAC
NONE
Target Sequence 
GAAGACCATGATGCCGCGGCGCGTTCCGGTGCTCGCGCTCCTCCACCCCAAGGAGCTCGGCGTGGTGTTCTTCTTCCAGA
TCACCTCGCGGAACTCGTGGATGTTCGCCGTCGACCTGGTCACCAGAATCGTGCTCGAGTGCAAGAAGTACAAGATGCCC
CAGCTGCCGACGATGTACCACTCCTCTCGCCACGTCCGCGCTTGGGAGCTGCCACATTCGATCTGCCGCGGAGAGGATGA
TGAGACAGATGGTACTNNTTNNNATGNTGNNNATGNNCTGNANNTNNNNTTTGNNNNNNTCATGNNTANTCNTNNNNNNN
NNNNNAATCTGACGGATGAGCTNGACTTGAACTTTTCGAGNGACAAAGCTGANGAACTGCTGTCAACCACTGGAAGGCTC
TTCATCAATCCNAGGTTCCAGGAACTGAGGAATGCCACTGCTTTTCCTAAGTACTTGTCATTTGTCATTGTCAAGGCTAC
NGACGCATATGAGGCATNGTGTCTGATGCGANACTTCGTGTCACATGTCTCCATGGACGGTTCAAAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23240.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis