Browse Element(s) Details


Os.15122.2.S1_x_at

Description gb:NM_188761.1
DB_XREF= gi:34904605
GEN=OSJNBa0004G10.14
TID=Os.15122.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.15122 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative CREB-binding protein (OSJNBa0004G10.14), mRNA.
PROD=putative CREB-binding protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1437011/11TAZ zinc finger family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g14320OsAffx.23239.1.S1_x_at11/111+8020589..8021737hypothetical protein
LOC_Os01g14330OsAffx.9859.1.S1_at11/111+8027686..8028573hypothetical protein
LOC_Os01g14340OsAffx.23240.1.S1_x_at10/111+8029678..8031824hypothetical protein
LOC_Os01g14340OsAffx.23240.2.S1_at1/111+8029678..8031824hypothetical protein
LOC_Os01g14350OsAffx.23240.1.S1_x_at6/111+8034696..8036492hypothetical protein
LOC_Os01g14350OsAffx.23240.2.S1_at1/111+8034696..8036492hypothetical protein
LOC_Os01g14360NANA1+8037758..8038012hypothetical protein
LOC_Os01g14370Os.15122.2.S1_x_at11/111+8044185..8052384TAZ zinc finger family protein, expressed
LOC_Os01g14370Os.15122.1.S1_a_at11/111+8044185..8052384TAZ zinc finger family protein, expressed
LOC_Os01g14370Os.15122.1.S1_at11/111+8044185..8052384TAZ zinc finger family protein, expressed
LOC_Os01g14380NANA1+8054525..8054737hypothetical protein
LOC_Os01g14390OsAffx.23241.1.S1_at11/111+8055586..8056785hypothetical protein
LOC_Os01g14400OsAffx.23242.1.S1_at11/111+8057160..8057654hypothetical protein
LOC_Os01g14410Os.9191.1.S1_s_at11/111+8058660..8059694Early light-induced protein, chloroplast precursor, putative, expressed
LOC_Os01g14410Os.57519.1.S1_x_at11/111+8058660..8059694Early light-induced protein, chloroplast precursor, putative, expressed
LOC_Os01g14420Os.1779.1.S1_at11/111+8061604..8065815RWP-RK domain containing protein, expressed
LOC_Os01g14420OsAffx.2005.1.S1_x_at11/111+8061604..8065815RWP-RK domain containing protein, expressed
LOC_Os01g14420OsAffx.2005.1.S1_at11/111+8061604..8065815RWP-RK domain containing protein, expressed
LOC_Os01g14430NANA1+8067924..8068635expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0006358biological_processregulation of global transcription from RNA polymerase II promoter
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003712molecular_functiontranscription cofactor activity
GO:0004402molecular_functionhistone acetyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15122.2.S1_x_at--478--4871Chr01:8046542..8046566 (25 bp)
GCTTCTACGGGTTGCCAAACGTGAT
LOC_Os01g14370
Os.15122.2.S1_x_at--1116--71Chr01:8046305..8046329 (25 bp)
ATTGCCACCATCCTATTGTATCTGG
LOC_Os01g14370
Os.15122.2.S1_x_at--301--1191Chr01:8046279..8046303 (25 bp)
AGTAGTTGGGTTTGCACCAGCTGCA
LOC_Os01g14370
Os.15122.2.S1_x_at--178--5091Chr01:8046266..8046290 (25 bp)
GCACCAGCTGCAAAAACTTCTTTCT
LOC_Os01g14370
Os.15122.2.S1_x_at--93--971Chr01:8045944..8045968 (25 bp)
AGGAGCTGAATACCCCTCTGAAGGA
LOC_Os01g14370
Os.15122.2.S1_x_at--984--2411Chr01:8044913..8044936 (24 bp)
AAAACTGTTCTTCCATGGTGTACGA
LOC_Os01g14370
Os.15122.2.S1_x_at--839--8611Chr01:8044898..8044922 (25 bp)
TGGTGTACGATGTCATACCCGTGCC
LOC_Os01g14370
Os.15122.2.S1_x_at--629--8651Chr01:8044839..8044863 (25 bp)
TGTGGAAACTGCTGTTCACGCACTC
LOC_Os01g14370
Os.15122.2.S1_x_at--227--1851Chr01:8044822..8044846 (25 bp)
ACGCACTCACTGCTTTGTGACAATG
LOC_Os01g14370
Os.15122.2.S1_x_at--683--3011Chr01:8044801..8044825 (25 bp)
AATGCAGACTGTTCAGCTCCCAGAT
LOC_Os01g14370
Os.15122.2.S1_x_at--440--991Chr01:8044774..8044798 (25 bp)
AGGTAAAGTGTGCATCACCCGCAAT
LOC_Os01g14370
Target Sequence 
GCTTCTACGGGTTGCCAAACGTGATGACCGGAAAGGAAACCTCGAGGATATTTTACTTGTGCATAAGCTTGGAGAAAGGT
TGCGAACCATGAAAGAAGATTTTTTAATGCTTTGTCTGCAGCAATTTTGCAAGCATTGCCACCATCCTATTGTATCTGGT
AGTAGTTGGGTTTGCACCAGCTGCAAAAACTTCTTTCTTTGTGAACGTTGTTATGCTGAGGAGCTGAATACCCCTCTGAA
GGACAGGCACCCAGCTACAACAAAACAAAAGCATGCATTTGAAAGAATAGAGGAAGAACCTCTTCCAGAAACGGATGATG
TAGATCCAACAATGGAAAGCAAAAACTGTTCTTCCATGGTGTACGATGTCATACCCGTGCCCGTGGTGGAGGAGGTTGCC
ATATGTGTGTATTCATGTGGAAACTGCTGTTCACGCACTCACTGCTTTGTGACAATGCAGACTGTTCAGCTCCCAGATGC
AGGTAAAGTGTGCATCACCCGCAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15122.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis