Browse Element(s) Details


Os.57519.1.S1_x_at

Description gb:CB683915
DB_XREF= gi:29687640
DB_XREF=OSJNEf12P06.f
CLONE=OSJNEf12P06
TID=Os.57519.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.57519 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) ELIP mRNA, partial sequence
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1441011/11Early light-induced protein, chloroplast precursor, putative, expressed
LOC_Os07g081503/11early light-inducible protein ELIP, putative, expressed
LOC_Os07g081601/11Early light-induced protein, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g14350OsAffx.23240.1.S1_x_at6/111+8034696..8036492hypothetical protein
LOC_Os01g14350OsAffx.23240.2.S1_at1/111+8034696..8036492hypothetical protein
LOC_Os01g14360NANA1+8037758..8038012hypothetical protein
LOC_Os01g14370Os.15122.2.S1_x_at11/111+8044185..8052384TAZ zinc finger family protein, expressed
LOC_Os01g14370Os.15122.1.S1_a_at11/111+8044185..8052384TAZ zinc finger family protein, expressed
LOC_Os01g14370Os.15122.1.S1_at11/111+8044185..8052384TAZ zinc finger family protein, expressed
LOC_Os01g14380NANA1+8054525..8054737hypothetical protein
LOC_Os01g14390OsAffx.23241.1.S1_at11/111+8055586..8056785hypothetical protein
LOC_Os01g14400OsAffx.23242.1.S1_at11/111+8057160..8057654hypothetical protein
LOC_Os01g14410Os.9191.1.S1_s_at11/111+8058660..8059694Early light-induced protein, chloroplast precursor, putative, expressed
LOC_Os01g14410Os.57519.1.S1_x_at11/111+8058660..8059694Early light-induced protein, chloroplast precursor, putative, expressed
LOC_Os01g14420Os.1779.1.S1_at11/111+8061604..8065815RWP-RK domain containing protein, expressed
LOC_Os01g14420OsAffx.2005.1.S1_x_at11/111+8061604..8065815RWP-RK domain containing protein, expressed
LOC_Os01g14420OsAffx.2005.1.S1_at11/111+8061604..8065815RWP-RK domain containing protein, expressed
LOC_Os01g14430NANA1+8067924..8068635expressed protein
LOC_Os01g14440OsAffx.11050.1.S1_x_at11/111+8081174..8083846WRKY DNA binding domain containing protein, expressed
LOC_Os01g14440OsAffx.11050.2.S1_x_at11/111+8081174..8083846WRKY DNA binding domain containing protein, expressed
LOC_Os01g14440OsAffx.29680.1.S1_at1/111+8081174..8083846WRKY DNA binding domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016168molecular_functionchlorophyll binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.57519.1.S1_x_at--594--10271Chr01:8058715..8058739 (25 bp)
TTTGCTTCAATTCGATCCTCGCTAA
LOC_Os01g14410
Os.57519.1.S1_x_at--1092--10491Chr01:8058720..8058744 (25 bp)
TTCAATTCGATCCTCGCTAAGCTTC
LOC_Os01g14410
Os.57519.1.S1_x_at--718--9771Chr01:8058737..8058761 (25 bp)
TAAGCTTCCTCCAGCTCGATCGATC
LOC_Os01g14410
Os.57519.1.S1_x_at--279--4552Chr07:4142526..4142572 (25 bp)
GCTCGTCAACGTCTAATTTAATTAA
LOC_Os07g08150
Os.57519.1.S1_x_at--169--9931Chr01:8059555..8059579 (25 bp)
TACGTATGCGTGTACTGGGTAGATA
LOC_Os01g14410
Os.57519.1.S1_x_at--1118--10111Chr01:8059559..8059583 (25 bp)
TATGCGTGTACTGGGTAGATAGCTA
LOC_Os01g14410
Os.57519.1.S1_x_at--304--6271Chr01:8059586..8059610 (25 bp)
GATGTGTATGTATGCACTGTAGCCA
LOC_Os01g14410
Os.57519.1.S1_x_at--989--6911Chr01:8059591..8059615 (25 bp)
GTATGTATGCACTGTAGCCAATAGC
LOC_Os01g14410
Os.57519.1.S1_x_at--30--5111Chr01:8059599..8059623 (25 bp)
GCACTGTAGCCAATAGCAAGCTTGA
LOC_Os01g14410
Os.57519.1.S1_x_at--1008--1532Chr07:4142677..4142701 (25 bp)
AGCTTGATAGTGCTTGGTGTACTAC
LOC_Os07g08150
Os.57519.1.S1_x_at--1043--6493Chr07:4142682..4142706 (25 bp)
GATAGTGCTTGGTGTACTACCTTGG
LOC_Os07g08150
Target Sequence 
TTTGCTTCAATTCGATCCTCGCTAAGCTTCCTCCAGCTCGATCGATCTCNNNNNNNNNNNNNNNNNGNNNANNNNNGNNN
TNGNGNTNNNNGCNNNNNCNNNNNNNNNGAANNNGNCGGTTCGCCATGCTCGGCCTCGTCGCGCTCGCCTTCACCGAGTT
CCTCACCGGCTCGNCGCTCGTCAACGTCTAATTTAATTAANTAATTAATTAAGCTGTACGTNNAATACGTGNATGTACGT
ATGCGTGTACTGGGTAGATAGCTANGGATGTGTATGTATGCACTGTAGCCAATAGCAAGCTTGATAGTGCTTGGTGTACT
ACCTTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.57519.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis