Browse Element(s) Details


OsAffx.23241.1.S1_at

Description tigr:9629.m01417
TID=OsAffx.23241.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1439011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g14340OsAffx.23240.1.S1_x_at10/111+8029678..8031824hypothetical protein
LOC_Os01g14340OsAffx.23240.2.S1_at1/111+8029678..8031824hypothetical protein
LOC_Os01g14350OsAffx.23240.1.S1_x_at6/111+8034696..8036492hypothetical protein
LOC_Os01g14350OsAffx.23240.2.S1_at1/111+8034696..8036492hypothetical protein
LOC_Os01g14360NANA1+8037758..8038012hypothetical protein
LOC_Os01g14370Os.15122.2.S1_x_at11/111+8044185..8052384TAZ zinc finger family protein, expressed
LOC_Os01g14370Os.15122.1.S1_a_at11/111+8044185..8052384TAZ zinc finger family protein, expressed
LOC_Os01g14370Os.15122.1.S1_at11/111+8044185..8052384TAZ zinc finger family protein, expressed
LOC_Os01g14380NANA1+8054525..8054737hypothetical protein
LOC_Os01g14390OsAffx.23241.1.S1_at11/111+8055586..8056785hypothetical protein
LOC_Os01g14400OsAffx.23242.1.S1_at11/111+8057160..8057654hypothetical protein
LOC_Os01g14410Os.9191.1.S1_s_at11/111+8058660..8059694Early light-induced protein, chloroplast precursor, putative, expressed
LOC_Os01g14410Os.57519.1.S1_x_at11/111+8058660..8059694Early light-induced protein, chloroplast precursor, putative, expressed
LOC_Os01g14420Os.1779.1.S1_at11/111+8061604..8065815RWP-RK domain containing protein, expressed
LOC_Os01g14420OsAffx.2005.1.S1_x_at11/111+8061604..8065815RWP-RK domain containing protein, expressed
LOC_Os01g14420OsAffx.2005.1.S1_at11/111+8061604..8065815RWP-RK domain containing protein, expressed
LOC_Os01g14430NANA1+8067924..8068635expressed protein
LOC_Os01g14440OsAffx.11050.1.S1_x_at11/111+8081174..8083846WRKY DNA binding domain containing protein, expressed
LOC_Os01g14440OsAffx.11050.2.S1_x_at11/111+8081174..8083846WRKY DNA binding domain containing protein, expressed
LOC_Os01g14440OsAffx.29680.1.S1_at1/111+8081174..8083846WRKY DNA binding domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23241.1.S1_at--932--6991Chr01:8056209..8056233 (25 bp)
GTACTTCCAGAAGACGTGCGCCTAC
LOC_Os01g14390
OsAffx.23241.1.S1_at--841--5311Chr01:8056281..8056305 (25 bp)
GAAGGTGATCCGCTATGCCTGCGTT
LOC_Os01g14390
OsAffx.23241.1.S1_at--1027--4651Chr01:8056364..8056388 (25 bp)
GCGTGTCTTGGATAGGCCTCTCCTA
LOC_Os01g14390
OsAffx.23241.1.S1_at--68--8711Chr01:8056415..8056439 (25 bp)
TGTGCCTCCTCTACTTCAGGGAGAA
LOC_Os01g14390
OsAffx.23241.1.S1_at--640--1451Chr01:8056436..8056460 (25 bp)
AGAAGTACGGTTTCTCCATGTCCGA
LOC_Os01g14390
OsAffx.23241.1.S1_at--93--1671Chr01:8056468..8056492 (25 bp)
AGCCTGCTCAAGTGGTGCAACGTGT
LOC_Os01g14390
OsAffx.23241.1.S1_at--199--1391Chr01:8056602..8056626 (25 bp)
AGACGCCGCTGCGATTGGGTTTCTC
LOC_Os01g14390
OsAffx.23241.1.S1_at--646--8031Chr01:8056644..8056668 (25 bp)
GGAGATGGCCAAGCCCATACTACGG
LOC_Os01g14390
OsAffx.23241.1.S1_at--265--2611Chr01:8056672..8056696 (25 bp)
AACGCGTCGGAGATTTTCACGTCGT
LOC_Os01g14390
OsAffx.23241.1.S1_at--217--7871Chr01:8056704..8056728 (25 bp)
GGTTTGCCTACGATACTGGCTGTAT
LOC_Os01g14390
OsAffx.23241.1.S1_at--751--471Chr01:8056727..8056751 (25 bp)
ATCTGCACGTTTTCTATATCCTTGG
LOC_Os01g14390
Target Sequence 
GTACTTCCAGAAGACGTGCGCCTACCCGGTGGACATGCCCAAGCACCTCGCCGCCTACGACCGGCCCCACCTGAAGGTGA
TCCGCTATGCCTGCGTTCGCTTCGTGGCCGCCGTGTCAGCCGCAAGCGCGATAGCCGGCGGCTTGGTCGTCGGCGGCGTG
TCTTGGATAGGCCTCTCCTACGCCGCCGTCTTCTTCGCGCTCCCCATGTGCCTCCTCTACTTCAGGGAGAAGTACGGTTT
CTCCATGTCCGATATGCCCAGCCTGCTCAAGTGGTGCAACGTGTCGGTGCCTATGGCGGCGCTAGCGCTGCTGTTCCGCC
TCGTGACGGCGGCGCGGCAGGCAGCCGCACCGGACGTTAGGCTCGTCGCCATTGCCGGCACCGTGTGGGCCGTAGACGCC
GCTGCGATTGGGTTTCTCGGCTGGCGCAGCACGAGGGAGATGGCCAAGCCCATACTACGGGCGAACGCGTCGGAGATTTT
CACGTCGTTCGTGATGGTTTGCCTACGATACTGGCTGTATCTGCACGTTTTCTATATCCTTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23241.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis