Browse Element(s) Details


OsAffx.11050.2.S1_x_at

Description tigr:9629.m01422
TID=OsAffx.11050.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=WRKY DNA -binding domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1444011/11WRKY DNA binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g14390OsAffx.23241.1.S1_at11/111+8055586..8056785hypothetical protein
LOC_Os01g14400OsAffx.23242.1.S1_at11/111+8057160..8057654hypothetical protein
LOC_Os01g14410Os.9191.1.S1_s_at11/111+8058660..8059694Early light-induced protein, chloroplast precursor, putative, expressed
LOC_Os01g14410Os.57519.1.S1_x_at11/111+8058660..8059694Early light-induced protein, chloroplast precursor, putative, expressed
LOC_Os01g14420Os.1779.1.S1_at11/111+8061604..8065815RWP-RK domain containing protein, expressed
LOC_Os01g14420OsAffx.2005.1.S1_x_at11/111+8061604..8065815RWP-RK domain containing protein, expressed
LOC_Os01g14420OsAffx.2005.1.S1_at11/111+8061604..8065815RWP-RK domain containing protein, expressed
LOC_Os01g14430NANA1+8067924..8068635expressed protein
LOC_Os01g14440OsAffx.11050.1.S1_x_at11/111+8081174..8083846WRKY DNA binding domain containing protein, expressed
LOC_Os01g14440OsAffx.11050.2.S1_x_at11/111+8081174..8083846WRKY DNA binding domain containing protein, expressed
LOC_Os01g14440OsAffx.29680.1.S1_at1/111+8081174..8083846WRKY DNA binding domain containing protein, expressed
LOC_Os01g14450Os.27691.1.S1_x_at1/111+8090401..8094063retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g14460Os.27691.2.S1_x_at1/111+8094315..8095175retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g14470NANA1+8098801..8100282hypothetical protein
LOC_Os01g14479NANA1+8103859..8104255NA

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11050.2.S1_x_at--234--6451Chr01:8083340..8083364 (25 bp)
GATCACGTCCATCATAGGCGGCCAG
LOC_Os01g14440
OsAffx.11050.2.S1_x_at--75--2171Chr01:8083447..8083471 (25 bp)
ACACGACGAGCAACAACACCAACAG
LOC_Os01g14440
OsAffx.11050.2.S1_x_at--1040--1071Chr01:8083487..8083511 (25 bp)
ACGAGTTCGGATCAGTAATTTTCAC
LOC_Os01g14440
OsAffx.11050.2.S1_x_at--572--6791Chr01:8083524..8083548 (25 bp)
GTTTTTACTCTTCTTTGTTCAGGAT
LOC_Os01g14440
OsAffx.11050.2.S1_x_at--288--6751Chr01:8083540..8083564 (25 bp)
GTTCAGGATAGGTTCTTGATTTCTC
LOC_Os01g14440
OsAffx.11050.2.S1_x_at--239--10791Chr01:8083555..8083579 (25 bp)
TTGATTTCTCTCCTTTGGTTTCGAT
LOC_Os01g14440
OsAffx.11050.2.S1_x_at--166--10251Chr01:8083568..8083592 (25 bp)
TTTGGTTTCGATAGCTCGGCCGAGC
LOC_Os01g14440
OsAffx.11050.2.S1_x_at--510--8651Chr01:8083600..8083624 (25 bp)
TGGGCACATGGTATACACTTTCTTT
LOC_Os01g14440
OsAffx.11050.2.S1_x_at--848--10171Chr01:8083611..8083635 (25 bp)
TATACACTTTCTTTTTTCTTCTCCA
LOC_Os01g14440
OsAffx.11050.2.S1_x_at--297--10331Chr01:8083625..8083649 (25 bp)
TTTCTTCTCCACTTTCCTGGTTTTG
LOC_Os01g14440
OsAffx.11050.2.S1_x_at--18--2491Chr01:8083708..8083732 (25 bp)
AACAGCTGTTGATACTTCGCAGTAA
LOC_Os01g14440
Target Sequence 
GATCACGTCCATCATAGGCGGCCAGCACGCGGCGGCAGCTGGCAACAGCAACGCGAACAACACCAACACCAACACCACGA
GCAACACCAACAACACAAGCAGCAACAACACGACGAGCAACAACACCAACAGCGAGACGCAGTAAAAACGAGTTCGGATC
AGTAATTTTCACATAGATTTCCAAGTTTTTACTCTTCTTTGTTCAGGATAGGTTCTTGATTTCTCTCCTTTGGTTTCGAT
AGCTCGGCCGAGCTGTGCAGTGGGCACATGGTATACACTTTCTTTTTTCTTCTCCACTTTCCTGGTTTTGCAGCAGCAAA
AAGTTGTATTAATTCATTGCTTTTTCTTAGTTCTTTTTCTACCGCAAAAACAGCTGTTGATACTTCGCAGTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11050.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis