Browse Element(s) Details


OsAffx.29680.1.S1_at

Description tigr:9637.m00055
TID=OsAffx.29680.1
CNT=4
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g0212011/11hypothetical protein
LOC_Os06g2253011/11hypothetical protein
LOC_Os07g125508/11hypothetical protein
LOC_Os06g482704/11hypothetical protein
LOC_Os12g319001/11Zinc knuckle family protein
LOC_Os01g144401/11WRKY DNA binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g02090Os.47463.1.S1_x_at4/119+768419..772116transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g02090Os.14491.2.S1_x_at4/119+768419..772116transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g02100NANA9+774719..778050transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g02110OsAffx.447.1.S1_at5/119+787457..791800retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g02110OsAffx.22947.2.S1_x_at1/119+787457..791800retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g02110Os.52609.1.S1_at1/119+787457..791800retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g02120OsAffx.29680.1.S1_at11/119+797021..797557hypothetical protein
LOC_Os09g02130Os.47900.1.A1_at10/119+798487..805530expressed protein
LOC_Os09g02130Os.8721.1.S1_at10/119+798487..805530expressed protein
LOC_Os09g02130OsAffx.6148.1.S1_x_at1/119+798487..805530expressed protein
LOC_Os09g02140Os.51727.1.S1_x_at10/119+816568..821751expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29680.1.S1_at--403--9954Chr09:797081..797105 (25 bp)
TACCCCAAGCGTGACGTGGACAACA
LOC_Os09g02120
OsAffx.29680.1.S1_at--751--2674Chr09:797087..797111 (25 bp)
AAGCGTGACGTGGACAACATGCAGT
LOC_Os09g02120
OsAffx.29680.1.S1_at--789--7375Chr09:797091..797115 (25 bp)
GTGACGTGGACAACATGCAGTGGTT
LOC_Os09g02120
OsAffx.29680.1.S1_at--1004--9454Chr09:797169..797193 (25 bp)
TCGGCCTCATCGTGCTCTGTGGCCA
LOC_Os09g02120
OsAffx.29680.1.S1_at--681--1653Chr09:797316..797340 (25 bp)
AGCCCGACTGCAACCAGTCCAAGTA
LOC_Os09g02120
OsAffx.29680.1.S1_at--295--1853Chr09:797322..797346 (25 bp)
ACTGCAACCAGTCCAAGTACACCGT
LOC_Os09g02120
OsAffx.29680.1.S1_at--51--2654Chr09:797327..797351 (25 bp)
AACCAGTCCAAGTACACCGTCAGCG
LOC_Os09g02120
OsAffx.29680.1.S1_at--714--1133Chr09:797331..797355 (25 bp)
AGTCCAAGTACACCGTCAGCGTGCT
LOC_Os09g02120
OsAffx.29680.1.S1_at--809--4472Chr09:797491..797515 (25 bp)
GCCGGCGGAGTTGACGAATCTGTTT
LOC_Os09g02120
OsAffx.29680.1.S1_at--110--3912Chr09:797493..797517 (25 bp)
CGGCGGAGTTGACGAATCTGTTTTC
LOC_Os09g02120
OsAffx.29680.1.S1_at--134--5792Chr09:797503..797527 (25 bp)
GACGAATCTGTTTTCGTGCACGCGT
LOC_Os09g02120
Target Sequence 
TACCCCAAGCGTGACGTGGACAACATGCAGTGGTTCCGGGAAATCACNCTGCTATACCGTGGCCACCGCCNCTCCGCACC
CTTCGTCCTCGGCCTCATCGTGCTCTGTGGCCANGCNCCGCCCAACAACTGGTGCCCATGGGGNCGAGAAGGGCGTGCGC
GGCCATCCTCNGGACCCCNGCACCCNGATCCGCTACGTCGNGATCTACATCNGCGGCTCCCATGCCTTGTGTACNAGCCC
GACTGCAACCAGTCCAAGTACACCGTCAGCGTGCTTCNTTTCCANNAGGACGGNGGAAGGATGGCGCGGCTNNNNGNNNN
NCNNNACAANNNNNGNNTNNCNNNGNNCNGCNNNGNNNNNNNNNNNNNNNNNNNNANGNTCNNNNNNNNNTNNNNNNTGG
ACGTGGCATGGCCGGCGGAGTTGACGAATCTGTTTTCGTGCACGCGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29680.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis