Browse Element(s) Details


Os.47900.1.A1_at

Description gb:AK106506.1
DB_XREF= gi:32991715
TID=Os.47900.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.47900 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-105-G01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-105-G01, full insert sequence.
FL= gb:AK106506.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g0213010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g02100NANA9+774719..778050transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g02110OsAffx.447.1.S1_at5/119+787457..791800retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g02110OsAffx.22947.2.S1_x_at1/119+787457..791800retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g02110Os.52609.1.S1_at1/119+787457..791800retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g02120OsAffx.29680.1.S1_at11/119+797021..797557hypothetical protein
LOC_Os09g02130Os.47900.1.A1_at10/119+798487..805530expressed protein
LOC_Os09g02130Os.8721.1.S1_at10/119+798487..805530expressed protein
LOC_Os09g02130OsAffx.6148.1.S1_x_at1/119+798487..805530expressed protein
LOC_Os09g02140Os.51727.1.S1_x_at10/119+816568..821751expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.47900.1.A1_at--263--4191Chr09:800362..800386 (25 bp)
CCCTTGGTCAGGATACTCTTTTCTA
LOC_Os09g02130
Os.47900.1.A1_at--752--5471Chr09:800428..800452 (25 bp)
GAACTTCCAATGTTTGTCGGAGAGT
LOC_Os09g02130
Os.47900.1.A1_at--832--3951Chr09:800445..800469 (25 bp)
CGGAGAGTAAGTTGTGTTCGCTATA
LOC_Os09g02130
Os.47900.1.A1_at--1083--5271Chr09:800556..800580 (25 bp)
GAATGGTCTGACATAACACTTGCAA
LOC_Os09g02130
Os.47900.1.A1_at--1065--6831Chr09:800581..800605 (25 bp)
GTTTCTGCCATAAAATTGGCCCTTC
LOC_Os09g02130
Os.47900.1.A1_at--856--9831Chr09:800610..800633 (24 bp)
TAAAGAGCCCTCCTAAATGTAAAGG
LOC_Os09g02130
Os.47900.1.A1_at--972--7031NONE
GTAAAGGGTTTCCATCCTGCATTCA
NONE
Os.47900.1.A1_at--46--10691Chr09:800637..800661 (25 bp)
TTCCATCCTGCATTCATAACCTTTG
LOC_Os09g02130
Os.47900.1.A1_at--408--2331Chr09:800706..800730 (25 bp)
AAAGTTTGCTTCAGCGATCTTCCGC
LOC_Os09g02130
Os.47900.1.A1_at--1037--1191Chr09:800759..800783 (25 bp)
AGTATATATTTCATGTGTTCCTTGT
LOC_Os09g02130
Os.47900.1.A1_at--1016--7731Chr09:800869..800893 (25 bp)
GGTGTGATCTTGAACATCTTAAGGT
LOC_Os09g02130
Target Sequence 
CCCTTGGTCAGGATACTCTTTTCTAGAATTTAACCACATAACCACTTTAATTTGTAAATGTAATTTGAACTTCCAATGTT
TGTCGGAGAGTAAGTTGTGTTCGCTATAGTTTTAGTTCTTTGTAAAAAAAAAGATAGTAAAGTGGCCATTTTTAGTTAAT
AATCAAACTAATTTATCTTTCTGGTTATTCAATAGAATGGTCTGACATAACACTTGCAAGTTTCTGCCATAAAATTGGCC
CTTCACCATAAAGAGCCCTCCTAAATGTAAAGGGTTTCCATCCTGCATTCATAACCTTTGCAATGGTAACAATCTTATTA
AAAGATATAGCATATAGTAGAGAGAAAGTTTGCTTCAGCGATCTTCCGCCNAACCATTTGTCCTCCCCNAAACTGTCAGT
ATATATTTCATGTGTTCCTTGTTTTAAGGGTTGCANGTACCTCTCAAGTTCCAAATCAATTATTTCATGATTTATTTGAT
TATTTTACTTCACCTTATTTCATTTTTGGTGTGATCTTGAACATCTTAAGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.47900.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis