Browse Element(s) Details


Os.51727.1.S1_x_at

Description gb:AK063547.1
DB_XREF= gi:32973565
TID=Os.51727.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51727 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-117-D04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-117-D04, full insert sequence.
FL= gb:AK063547.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g0214010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g02110OsAffx.447.1.S1_at5/119+787457..791800retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g02110OsAffx.22947.2.S1_x_at1/119+787457..791800retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g02110Os.52609.1.S1_at1/119+787457..791800retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g02120OsAffx.29680.1.S1_at11/119+797021..797557hypothetical protein
LOC_Os09g02130Os.47900.1.A1_at10/119+798487..805530expressed protein
LOC_Os09g02130Os.8721.1.S1_at10/119+798487..805530expressed protein
LOC_Os09g02130OsAffx.6148.1.S1_x_at1/119+798487..805530expressed protein
LOC_Os09g02140Os.51727.1.S1_x_at10/119+816568..821751expressed protein
LOC_Os09g02150OsAffx.14573.1.S1_at7/119+843147..845363hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006012biological_processgalactose metabolism
GO:0004034molecular_functionaldose 1-epimerase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51727.1.S1_x_at--729--10251Chr09:821212..821236 (25 bp)
TTTGAATAAGGCCACACCCATCAGT
LOC_Os09g02140
Os.51727.1.S1_x_at--1022--6811Chr09:821235..821259 (25 bp)
GTTTAGCACAGCACACCTACTGGAA
LOC_Os09g02140
Os.51727.1.S1_x_at--159--8511Chr09:821262..821286 (25 bp)
TGGCAGGCCACAACTCAGGAGATGT
LOC_Os09g02140
Os.51727.1.S1_x_at--724--8691Chr09:821284..821308 (25 bp)
TGTGCTTGCACATACTGTTCAGATT
LOC_Os09g02140
Os.51727.1.S1_x_at--423--10031Chr09:821331..821355 (25 bp)
TAGATGAAACCTCAATACCCACCGG
LOC_Os09g02140
Os.51727.1.S1_x_at--824--9951Chr09:821346..821370 (25 bp)
TACCCACCGGTGAGATGATGCCAGT
LOC_Os09g02140
Os.51727.1.S1_x_at--951--6591Chr09:821419..821443 (25 bp)
GATTGATCAAGTCCCTGGTGGCTAT
LOC_Os09g02140
Os.51727.1.S1_x_at--140--2851Chr09:821477..821501 (25 bp)
AAGTCAGGTTTGTGCCATGTGGCGA
LOC_Os09g02140
Os.51727.1.S1_x_at--349--7551Chr09:821495..821519 (25 bp)
GTGGCGAAAGTGACAGACCCTTCAA
LOC_Os09g02140
Os.51727.1.S1_x_at--26--2691Chr09:821518..821542 (25 bp)
AAGCTCCAGGGTCCTTGACATTTGG
LOC_Os09g02140
Os.51727.1.S1_x_at--958--3271Chr09:821745..821769 (25 bp)
CAAAATGATCCAGTTCTTGTAGGCC
NONE
Target Sequence 
TTTGAATAAGGCCACACCCATCAGTTTAGCACAGCACACCTACTGGAACCTGGCAGGCCACAACTCAGGAGATGTGCTTG
CACATACTGTTCAGATTTTGGGGTCTCAGATAACACCGGTAGATGAAACCTCAATACCCACCGGTGAGATGATGCCAGTT
AGTGGCTCACCCTTCAATTTCCTGACAGAGACCACAATTGGCAGCAGGATTGATCAAGTCCCTGGTGGCTATGATCACAA
CTTTGTGATTGATTGTGGTGAAGTGAAGTCAGGTTTGTGCCATGTGGCGAAAGTGACAGACCCTTCAAGCTCCAGGGTCC
TTGACATTTGGGCAGATGCACCTGGAGTGCAGTTCTACACTGGAAATTTCCTCAATGGCATTGTGGGCAAAGGAGGCGCA
GTCTATGGGAAGCACGCCGGCCTGTGTCTTGAGACCCAAGGTTTCCCAAACGCAGTGAACCAACCTAATTTTCCCTCGGT
GGTCGTTCAGCCTGGTGAGAAGTATAGTCATACGATGTTGTTTGAGTTTTCAACAAAATGATCCAGTTCTTGTAGGCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51727.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis