Browse Element(s) Details


OsAffx.6148.1.S1_x_at

Description tigr:9637.m00056
TID=OsAffx.6148.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g021301/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g02100NANA9+774719..778050transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g02110OsAffx.447.1.S1_at5/119+787457..791800retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g02110OsAffx.22947.2.S1_x_at1/119+787457..791800retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g02110Os.52609.1.S1_at1/119+787457..791800retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g02120OsAffx.29680.1.S1_at11/119+797021..797557hypothetical protein
LOC_Os09g02130Os.47900.1.A1_at10/119+798487..805530expressed protein
LOC_Os09g02130Os.8721.1.S1_at10/119+798487..805530expressed protein
LOC_Os09g02130OsAffx.6148.1.S1_x_at1/119+798487..805530expressed protein
LOC_Os09g02140Os.51727.1.S1_x_at10/119+816568..821751expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6148.1.S1_x_at--61--6651Chr09:805315..805339 (25 bp)
GTTGTTTTCATAAAGCTCTCGGTTT
LOC_Os09g02130
OsAffx.6148.1.S1_x_at--82--4791NONE
GCTCTCGGTTTCAAAGCAGGGCGAC
NONE
OsAffx.6148.1.S1_x_at--727--5631Chr09:806635..806659 (25 bp)
GACACGGGTGGTGGCCACTGCCGGC
NONE
OsAffx.6148.1.S1_x_at--862--5731Chr09:806687..806711 (25 bp)
GACGGCGGCAGCAGGGCCTCCTTCT
NONE
OsAffx.6148.1.S1_x_at--233--3191Chr09:806716..806740 (25 bp)
CAAGGTCGCGGGTTCGGAGCCCACG
NONE
OsAffx.6148.1.S1_x_at--384--7631Chr09:806757..806781 (25 bp)
GGGACGGCGTCAGGCGTTGGGCGAA
NONE
OsAffx.6148.1.S1_x_at--272--5372Chr09:806779..806803 (25 bp)
GAAGAGCGCGATGGCCTGGCTGCCG
NONE
OsAffx.6148.1.S1_x_at--537--6231Chr09:806815..806839 (25 bp)
GATGGCATCGGCAGCTGGGTGGACC
NONE
OsAffx.6148.1.S1_x_at--972--891Chr09:806854..806878 (25 bp)
AGGCGGCGACACTGGTCTGACGCCC
NONE
OsAffx.6148.1.S1_x_at--490--1291Chr09:806887..806911 (25 bp)
AGATCCGACACCCTGTCGTCCGGAT
NONE
OsAffx.6148.1.S1_x_at--425--991Chr09:807103..807127 (25 bp)
AGGATGCGGCGCAAACGTGGAGGCA
NONE
Target Sequence 
GTTGTTTTCATAAAGCTCTCGGTTTCAAAGCAGGGCGACACGGGTGGTGGCCACTGCCGGCGCGCCAACTCCGCCTCACC
GCCACAAGGACGGCGGCAGCAGGGCCTCCTTCTCCCCCAAGGTCGCGGGTTCGGAGCCCACGACCCCGGCCAGCTCCTGG
GACGGCGTCAGGCGTTGGGCGAAGAGCGCGATGGCCTGGCTGCCGGCGTCGAAGGTGATGGCATCGGCAGCTGGGTGGAC
CGGGTGGCGATGGCGAGGCGGCGACACTGGTCTGACGCCCTCCCAGCCAGATCCGACACCCTGTCGTCCGGATCCGGCCT
CCCCGGCGCGGGAGGCCAGCCTCCCGTGCTGGCGGCGACGGCGAGGCGCCGGGGTACAGCGGCGTGGTGGCGGTGGCACC
GCGACGCTGGGTCTGGCACCCCTCGCCAGATCTCGCCCACCTTGTCCGGTTCCGGCCTCCCTGGTGCGGGAGGCCAACCC
CGTGGGCCGGCAGCGCGCGCGTGGAGGATGCGGCGCAAACGTGGAGGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6148.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis