Browse Element(s) Details


Os.8721.1.S1_at

Description gb:AK071505.1
DB_XREF= gi:32981528
TID=Os.8721.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.8721 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023089O08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023089O08, full insert sequence.
FL= gb:AK071505.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g0213010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g02100NANA9+774719..778050transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g02110OsAffx.447.1.S1_at5/119+787457..791800retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g02110OsAffx.22947.2.S1_x_at1/119+787457..791800retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g02110Os.52609.1.S1_at1/119+787457..791800retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g02120OsAffx.29680.1.S1_at11/119+797021..797557hypothetical protein
LOC_Os09g02130Os.47900.1.A1_at10/119+798487..805530expressed protein
LOC_Os09g02130Os.8721.1.S1_at10/119+798487..805530expressed protein
LOC_Os09g02130OsAffx.6148.1.S1_x_at1/119+798487..805530expressed protein
LOC_Os09g02140Os.51727.1.S1_x_at10/119+816568..821751expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8721.1.S1_at--203--3031Chr09:804055..804078 (24 bp)
AATCCTTGAAGAATCCGACTCCTGC
LOC_Os09g02130
Os.8721.1.S1_at--552--4091NONE
CGACTCCTGCCCAGAGGGAAAAGGT
NONE
Os.8721.1.S1_at--413--4271Chr09:804945..804969 (25 bp)
CCTCATTGAGCAGCTGACAGCTAAG
LOC_Os09g02130
Os.8721.1.S1_at--688--5011Chr09:805344..805368 (25 bp)
GCAGTAAGAAACTTTTGTTCCCATA
LOC_Os09g02130
Os.8721.1.S1_at--743--6191Chr09:805373..805397 (25 bp)
GAGGAACTATGTTTCTGATATTAAC
LOC_Os09g02130
Os.8721.1.S1_at--1102--6511Chr09:805389..805413 (25 bp)
GATATTAACGTGTGACTATTTTCCT
LOC_Os09g02130
Os.8721.1.S1_at--103--7471Chr09:805398..805422 (25 bp)
GTGTGACTATTTTCCTATGTATTTA
LOC_Os09g02130
Os.8721.1.S1_at--346--6811Chr09:805434..805458 (25 bp)
GTTTATCCCCATACAAAGGATCTTT
LOC_Os09g02130
Os.8721.1.S1_at--718--3291Chr09:805447..805471 (25 bp)
CAAAGGATCTTTGTTTCTACTATCA
LOC_Os09g02130
Os.8721.1.S1_at--531--5111Chr09:805477..805501 (25 bp)
GCAAGTACTTGCAGGATGTATAAAT
LOC_Os09g02130
Os.8721.1.S1_at--318--2251Chr09:805498..805522 (25 bp)
AAATCAAGAAGCGTCGTAGCCTCTT
LOC_Os09g02130
Target Sequence 
AATCCTTGAAGAATCCGACTCCTGCCCAGAGGGAAAAGGTCCTGGAGAANCAATTACATAGCCTCATTGAGCAGCTGACA
GCTAAGCAAGCTCAAGCTGAAGGCCTAATCGTGGATGTTCATGCCAAAGAAAAGGAATTGGAAAGGTTGAATAATTTACA
TAAAAATCTTCAAAGTCGTANCAATGATGGTAGTGTAGCACGAAATCCATTCAGGGCTGTGCATGAAGATTCTGATGCCA
AAGCTGTTCGGCGACCCTATCAATTTGGTCTTAGAACCGAAGGGCTGAAAAGGTTGATGATTCTTAGGTCTGCTTNTGTT
CTCTATATTTTGGTACTTCATATTGTTGTTTTCATAAAGCTCTCGGTTTCAAAGCAGTAAGAAACTTTTGTTCCCATATA
AAGAGGAACTATGTTTCTGATATTAACGTGTGACTATTTTCCTATGTATTTAGTTCTAAAAATGTTTATCCCCATACAAA
GGATCTTTGTTTCTACTATCAAACATGCAAGTACTTGCAGGATGTATAAATCAAGAAGCGTCGTAGCCTCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8721.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis