Browse Element(s) Details


Os.1779.1.S1_at

Description gb:AK058984.1
DB_XREF= gi:32969002
TID=Os.1779.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.1779 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) OSJNBa0004G10.17 (OSJNBa0004G10.17), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-020-E04, full insert sequence.
FL= gb:AK058984.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1442011/11RWP-RK domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g14360NANA1+8037758..8038012hypothetical protein
LOC_Os01g14370Os.15122.2.S1_x_at11/111+8044185..8052384TAZ zinc finger family protein, expressed
LOC_Os01g14370Os.15122.1.S1_a_at11/111+8044185..8052384TAZ zinc finger family protein, expressed
LOC_Os01g14370Os.15122.1.S1_at11/111+8044185..8052384TAZ zinc finger family protein, expressed
LOC_Os01g14380NANA1+8054525..8054737hypothetical protein
LOC_Os01g14390OsAffx.23241.1.S1_at11/111+8055586..8056785hypothetical protein
LOC_Os01g14400OsAffx.23242.1.S1_at11/111+8057160..8057654hypothetical protein
LOC_Os01g14410Os.9191.1.S1_s_at11/111+8058660..8059694Early light-induced protein, chloroplast precursor, putative, expressed
LOC_Os01g14410Os.57519.1.S1_x_at11/111+8058660..8059694Early light-induced protein, chloroplast precursor, putative, expressed
LOC_Os01g14420Os.1779.1.S1_at11/111+8061604..8065815RWP-RK domain containing protein, expressed
LOC_Os01g14420OsAffx.2005.1.S1_x_at11/111+8061604..8065815RWP-RK domain containing protein, expressed
LOC_Os01g14420OsAffx.2005.1.S1_at11/111+8061604..8065815RWP-RK domain containing protein, expressed
LOC_Os01g14430NANA1+8067924..8068635expressed protein
LOC_Os01g14440OsAffx.11050.1.S1_x_at11/111+8081174..8083846WRKY DNA binding domain containing protein, expressed
LOC_Os01g14440OsAffx.11050.2.S1_x_at11/111+8081174..8083846WRKY DNA binding domain containing protein, expressed
LOC_Os01g14440OsAffx.29680.1.S1_at1/111+8081174..8083846WRKY DNA binding domain containing protein, expressed
LOC_Os01g14450Os.27691.1.S1_x_at1/111+8090401..8094063retrotransposon protein, putative, Ty3-gypsy subclass

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.1779.1.S1_at--138--171Chr01:8061807..8061831 (25 bp)
ATTTTGCCTGCCATTTGTACCTCTG
LOC_Os01g14420
Os.1779.1.S1_at--1043--4411Chr01:8061798..8061822 (25 bp)
GCCATTTGTACCTCTGTGTAACACT
LOC_Os01g14420
Os.1779.1.S1_at--813--6771Chr01:8061772..8061796 (25 bp)
GTTACTAGTAGTAGCGACCGGCATG
LOC_Os01g14420
Os.1779.1.S1_at--781--10051Chr01:8061767..8061791 (25 bp)
TAGTAGTAGCGACCGGCATGGTTAA
LOC_Os01g14420
Os.1779.1.S1_at--151--5011Chr01:8061752..8061776 (25 bp)
GCATGGTTAAGCTGGTTCCTGATGT
LOC_Os01g14420
Os.1779.1.S1_at--517--10671Chr01:8061737..8061761 (25 bp)
TTCCTGATGTAACTTGTCCTGATCC
LOC_Os01g14420
Os.1779.1.S1_at--711--7051Chr01:8061729..8061753 (25 bp)
GTAACTTGTCCTGATCCATTTGTGT
LOC_Os01g14420
Os.1779.1.S1_at--1050--4271Chr01:8061720..8061744 (25 bp)
CCTGATCCATTTGTGTTGTGAGAAC
LOC_Os01g14420
Os.1779.1.S1_at--435--6231Chr01:8061673..8061697 (25 bp)
GATGGTAGGAGTTTTGCCTGCCTGC
LOC_Os01g14420
Os.1779.1.S1_at--453--1211Chr01:8061664..8061688 (25 bp)
AGTTTTGCCTGCCTGCTTTCCCATT
LOC_Os01g14420
Os.1779.1.S1_at--1027--4111Chr01:8061636..8061660 (25 bp)
CGCATAATTCCTTTCGTCTCAAAAT
LOC_Os01g14420
Target Sequence 
ATTTTGCCTGCCATTTGTACCTCTGTGTAACACTAGTTACTAGTAGTAGCGACCGGCATGGTTAAGCTGGTTCCTGATGT
AACTTGTCCTGATCCATTTGTGTTGTGAGAACTAGATAAATTCGTTGTGAAGAGGATGGTAGGAGTTTTGCCTGCCTGCT
TTCCCATTTCNCGCATAATTCCTTTCGTCTCAAAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.1779.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis