Browse Element(s) Details


OsAffx.11050.1.S1_x_at

Description gb:NM_188767.1
DB_XREF= gi:34904617
GEN=OSJNBa0004G10.20
TID=OsAffx.11050.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) putative WRKY DNA binding protein (OSJNBa0004G10.20), mRNA.
PROD=putative WRKY DNA binding protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1444011/11WRKY DNA binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g14390OsAffx.23241.1.S1_at11/111+8055586..8056785hypothetical protein
LOC_Os01g14400OsAffx.23242.1.S1_at11/111+8057160..8057654hypothetical protein
LOC_Os01g14410Os.9191.1.S1_s_at11/111+8058660..8059694Early light-induced protein, chloroplast precursor, putative, expressed
LOC_Os01g14410Os.57519.1.S1_x_at11/111+8058660..8059694Early light-induced protein, chloroplast precursor, putative, expressed
LOC_Os01g14420Os.1779.1.S1_at11/111+8061604..8065815RWP-RK domain containing protein, expressed
LOC_Os01g14420OsAffx.2005.1.S1_x_at11/111+8061604..8065815RWP-RK domain containing protein, expressed
LOC_Os01g14420OsAffx.2005.1.S1_at11/111+8061604..8065815RWP-RK domain containing protein, expressed
LOC_Os01g14430NANA1+8067924..8068635expressed protein
LOC_Os01g14440OsAffx.11050.1.S1_x_at11/111+8081174..8083846WRKY DNA binding domain containing protein, expressed
LOC_Os01g14440OsAffx.11050.2.S1_x_at11/111+8081174..8083846WRKY DNA binding domain containing protein, expressed
LOC_Os01g14440OsAffx.29680.1.S1_at1/111+8081174..8083846WRKY DNA binding domain containing protein, expressed
LOC_Os01g14450Os.27691.1.S1_x_at1/111+8090401..8094063retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g14460Os.27691.2.S1_x_at1/111+8094315..8095175retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g14470NANA1+8098801..8100282hypothetical protein
LOC_Os01g14479NANA1+8103859..8104255NA

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11050.1.S1_x_at--730--7311Chr01:8082936..8082960 (25 bp)
GTGCTGCCGTGCTCGTCCAGCATGG
LOC_Os01g14440
OsAffx.11050.1.S1_x_at--32--4131Chr01:8083075..8083099 (25 bp)
CGCAGTTCCAGGTGCCGCTGCCAGG
LOC_Os01g14440
OsAffx.11050.1.S1_x_at--409--9171Chr01:8083126..8083150 (25 bp)
TGCCGCCGCAGGTGCTGTACAACCA
LOC_Os01g14440
OsAffx.11050.1.S1_x_at--509--8731Chr01:8083141..8083165 (25 bp)
TGTACAACCAGTCCAAGTTCTCCGG
LOC_Os01g14440
OsAffx.11050.1.S1_x_at--395--2831Chr01:8083155..8083179 (25 bp)
AAGTTCTCCGGCCTGCAGATGTCCT
LOC_Os01g14440
OsAffx.11050.1.S1_x_at--849--1291Chr01:8083171..8083195 (25 bp)
AGATGTCCTCCGATTCAGCCGAGGC
LOC_Os01g14440
OsAffx.11050.1.S1_x_at--1012--4691Chr01:8083332..8083356 (25 bp)
GCGGCGGCGATCACGTCCATCATAG
LOC_Os01g14440
OsAffx.11050.1.S1_x_at--235--6451Chr01:8083340..8083364 (25 bp)
GATCACGTCCATCATAGGCGGCCAG
LOC_Os01g14440
OsAffx.11050.1.S1_x_at--840--4691Chr01:8083371..8083395 (25 bp)
GCGGCAGCTGGCAACAGCAACGCGA
LOC_Os01g14440
OsAffx.11050.1.S1_x_at--777--4711Chr01:8083377..8083401 (25 bp)
GCTGGCAACAGCAACGCGAACAACA
LOC_Os01g14440
OsAffx.11050.1.S1_x_at--521--5151Chr01:8083420..8083444 (25 bp)
GCAACACCAACAACACAAGCAGCAA
LOC_Os01g14440
Target Sequence 
GTGCTGCCGTGCTCGTCCAGCATGGCCACCATCTCGGCGTCGGCCCCGTTCCCGACGGTCACGCTCGACCTCACCCACGC
GCCGCCGGGCGCGCCGAACGCCGTGCCGCTCAACGCCGCGCGGCCGGGCGCGCCGGCGCCGCAGTTCCAGGTGCCGCTGC
CAGGCGGAGGGATGGCGCCGGCGTTCGCCGTGCCGCCGCAGGTGCTGTACAACCAGTCCAAGTTCTCCGGCCTGCAGATG
TCCTCCGATTCAGCCGAGGCCGCCGCCGCCGCCGCCGCCGCCGCGCAGTTCGCGCAACCGAGGCCGCCGATCGGGCAGCT
GCCTGGCCCTCTCTCCGACACCGTCAGCGCGGCGGCGGCGGCGATCACCGCTGACCCCAACTTCACGGTGGCGCTCGCGG
CGGCGATCACGTCCATCATAGGCGGCCAGCACGCGGCGGCAGCTGGCAACAGCAACGCGAACAACACCAACACCAACACC
ACGAGCAACACCAACAACACAAGCAGCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11050.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis