Browse Element(s) Details


Os.26365.1.S1_at

Description gb:AK072151.1
DB_XREF= gi:32982174
TID=Os.26365.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.26365 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0489B03.11 (P0489B03.11), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013132O07, full insert sequence.
FL= gb:AK072151.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6403011/11F-box family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g64000Os.10541.1.S1_at11/111+37501402..37503251ABA response element binding factor, putative, expressed
LOC_Os01g64010Os.5366.1.S2_at11/111+37504302..37511595Dual specificity phosphatase, catalytic domain containing protein, expressed
LOC_Os01g64010Os.5366.2.S1_at11/111+37504302..37511595Dual specificity phosphatase, catalytic domain containing protein, expressed
LOC_Os01g64010Os.5366.1.S1_a_at11/111+37504302..37511595Dual specificity phosphatase, catalytic domain containing protein, expressed
LOC_Os01g64010Os.5366.3.S1_x_at11/111+37504302..37511595Dual specificity phosphatase, catalytic domain containing protein, expressed
LOC_Os01g64020Os.42388.1.S1_x_at11/111+37508354..37515429Transcription factor HBP-1b, putative, expressed
LOC_Os01g64020Os.25548.1.A1_at11/111+37508354..37515429Transcription factor HBP-1b, putative, expressed
LOC_Os01g64020Os.42388.1.S1_at11/111+37508354..37515429Transcription factor HBP-1b, putative, expressed
LOC_Os01g64020OsAffx.23909.1.S1_at11/111+37508354..37515429Transcription factor HBP-1b, putative, expressed
LOC_Os01g64020Os.25548.1.A1_x_at11/111+37508354..37515429Transcription factor HBP-1b, putative, expressed
LOC_Os01g64020Os.52227.1.S1_at1/111+37508354..37515429Transcription factor HBP-1b, putative, expressed
LOC_Os01g64030Os.26365.1.S1_at11/111+37517284..37524641F-box family protein, putative, expressed
LOC_Os01g64030Os.19541.1.S1_at1/111+37517284..37524641F-box family protein, putative, expressed
LOC_Os01g64030Os.5606.1.S1_at1/111+37517284..37524641F-box family protein, putative, expressed
LOC_Os01g64040NANA1+37525182..37525692expressed protein
LOC_Os01g64050NANA1+37528099..37531259hypothetical protein
LOC_Os01g64060NANA1+37531704..37532972retrotransposon protein, putative, unclassified
LOC_Os01g64070Os.46862.1.S1_at10/111+37537699..37543973retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g64070OsAffx.22385.1.S1_x_at5/111+37537699..37543973retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g64070OsAffx.20329.1.S1_at2/111+37537699..37543973retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g64080OsAffx.16451.1.A1_x_at2/111+37549567..37555857retrotransposon protein, putative, unclassified
LOC_Os01g64080OsAffx.22699.1.S1_x_at2/111+37549567..37555857retrotransposon protein, putative, unclassified
LOC_Os01g64080OsAffx.16451.1.A1_at1/111+37549567..37555857retrotransposon protein, putative, unclassified
LOC_Os01g64080Os.45161.1.A1_x_at1/111+37549567..37555857retrotransposon protein, putative, unclassified
LOC_Os01g64080OsAffx.8279.1.S1_at1/111+37549567..37555857retrotransposon protein, putative, unclassified

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26365.1.S1_at--97--6091Chr01:37522645..37522669 (25 bp)
GAGTACGAGTGATCATTGTCCAAGT
LOC_Os01g64030
Os.26365.1.S1_at--319--10711Chr01:37522607..37522631 (25 bp)
TTGCCCTAGCTCATTCGAGACATAC
LOC_Os01g64030
Os.26365.1.S1_at--184--411Chr01:37517722..37517744 (23 bp)
ATCAGATTTGCTTCTCATCCAACTT
LOC_Os01g64030
Os.26365.1.S1_at--825--5291Chr01:37517694..37517718 (25 bp)
GAAGGCCTGTGGTTTGTTACTGTCA
LOC_Os01g64030
Os.26365.1.S1_at--856--6771Chr01:37517679..37517703 (25 bp)
GTTACTGTCAGCTGCATGTACTTGA
LOC_Os01g64030
Os.26365.1.S1_at--846--3531Chr01:37517561..37517585 (25 bp)
CATCGTCCTCTCTGTTAGTGAAACA
LOC_Os01g64030
Os.26365.1.S1_at--1084--7751Chr01:37517511..37517535 (25 bp)
GGTGACATTTATTTGGCACATGCCC
LOC_Os01g64030
Os.26365.1.S1_at--251--351Chr01:37517480..37517504 (25 bp)
ATAATGCCCTCATCTTTTGGTCTGT
LOC_Os01g64030
Os.26365.1.S1_at--169--7731Chr01:37517438..37517462 (25 bp)
GGTGGGAATTCTCTTTACATACTGT
LOC_Os01g64030
Os.26365.1.S1_at--1117--2811Chr01:37517385..37517409 (25 bp)
AAGTTGACTTCATGCCCACAGAAAA
LOC_Os01g64030
Os.26365.1.S1_at--1114--3791Chr01:37517305..37517329 (25 bp)
CTCGCGCCGAGTGATTCTATTATAT
LOC_Os01g64030
Target Sequence 
GAGTACGAGTGATCATTGTCCAAGTTGGGTGGGCATTCTTGCCCTAGCTCATTCGAGACATACCATCAGATTTGCTTCTC
ATCCAACTTCACGAAGGCCTGTGGTTTGTTACTGTCAGCTGCATGTACTTGATCAAGAAAGTTTGAGTTGACATGTCCAC
AGAATAAAAAGCGCATGCATTTGCCAATACATTATAGCACAAGTCGCGCACCCTTCTCTGGAAACCATCGTCCTCTCTGT
TAGTGAAACACCTCCAACTGAAATGGAATGCTTAAGGTGACATTTATTTGGCACATGCCCATGAATATAATGCCCTCATC
TTTTGGTCTGTTCATGAGAGAAATTTTGGGTGGGAATTCTCTTTACATACTGTAAGTGTGAATGGAAGATTTATAAATTG
TAAGTTGACTTCATGCCCACAGAAAACGTGAATTCTCTTAGGAAAATGGTTATTCCCCTGAAACTTTACGCCTTGNAATT
CCTCGCGCCGAGTGATTCTATTATAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26365.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis