Browse Element(s) Details


Os.25548.1.A1_x_at

Description gb:AK101338.1
DB_XREF= gi:32986547
TID=Os.25548.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.25548 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033034J12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033034J12, full insert sequence.
FL= gb:AK101338.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6402011/11Transcription factor HBP-1b, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g63990Os.6375.2.S1_x_at11/111+37481297..37484299hydrolase, alpha/beta fold family protein, expressed
LOC_Os01g63990Os.6375.1.S1_s_at11/111+37481297..37484299hydrolase, alpha/beta fold family protein, expressed
LOC_Os01g64000Os.10541.1.S1_at11/111+37501402..37503251ABA response element binding factor, putative, expressed
LOC_Os01g64010Os.5366.1.S2_at11/111+37504302..37511595Dual specificity phosphatase, catalytic domain containing protein, expressed
LOC_Os01g64010Os.5366.2.S1_at11/111+37504302..37511595Dual specificity phosphatase, catalytic domain containing protein, expressed
LOC_Os01g64010Os.5366.1.S1_a_at11/111+37504302..37511595Dual specificity phosphatase, catalytic domain containing protein, expressed
LOC_Os01g64010Os.5366.3.S1_x_at11/111+37504302..37511595Dual specificity phosphatase, catalytic domain containing protein, expressed
LOC_Os01g64020Os.42388.1.S1_x_at11/111+37508354..37515429Transcription factor HBP-1b, putative, expressed
LOC_Os01g64020Os.25548.1.A1_at11/111+37508354..37515429Transcription factor HBP-1b, putative, expressed
LOC_Os01g64020Os.42388.1.S1_at11/111+37508354..37515429Transcription factor HBP-1b, putative, expressed
LOC_Os01g64020OsAffx.23909.1.S1_at11/111+37508354..37515429Transcription factor HBP-1b, putative, expressed
LOC_Os01g64020Os.25548.1.A1_x_at11/111+37508354..37515429Transcription factor HBP-1b, putative, expressed
LOC_Os01g64020Os.52227.1.S1_at1/111+37508354..37515429Transcription factor HBP-1b, putative, expressed
LOC_Os01g64030Os.26365.1.S1_at11/111+37517284..37524641F-box family protein, putative, expressed
LOC_Os01g64030Os.19541.1.S1_at1/111+37517284..37524641F-box family protein, putative, expressed
LOC_Os01g64030Os.5606.1.S1_at1/111+37517284..37524641F-box family protein, putative, expressed
LOC_Os01g64040NANA1+37525182..37525692expressed protein
LOC_Os01g64050NANA1+37528099..37531259hypothetical protein
LOC_Os01g64060NANA1+37531704..37532972retrotransposon protein, putative, unclassified
LOC_Os01g64070Os.46862.1.S1_at10/111+37537699..37543973retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g64070OsAffx.22385.1.S1_x_at5/111+37537699..37543973retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g64070OsAffx.20329.1.S1_at2/111+37537699..37543973retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0016563molecular_functiontranscriptional activator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.25548.1.A1_x_at--951--7631Chr01:37510885..37510909 (25 bp)
GGGATCTACAGCCTGCAGCAGTCGT
LOC_Os01g64020
Os.25548.1.A1_x_at--922--7291Chr01:37510762..37510786 (25 bp)
GTGCCCAACTACATGAGCCTCATGG
LOC_Os01g64020
Os.25548.1.A1_x_at--50--5571Chr01:37510358..37510732 (25 bp)
GAAAGCTTCTACCAGCAGGCTGACA
LOC_Os01g64020
Os.25548.1.A1_x_at--213--2391Chr01:37508988..37509012 (25 bp)
AAACGTTGCATCAGCTGCGGCGGAT
LOC_Os01g64020
Os.25548.1.A1_x_at--85--7891Chr01:37508967..37508991 (25 bp)
GGATTCTAACAACCCGGCAGGCGGC
LOC_Os01g64020
Os.25548.1.A1_x_at--467--4611Chr01:37508576..37508596 (21 bp)
GCGAGAACTTCATTGGCACCGAGAG
LOC_Os01g64020
Os.25548.1.A1_x_at--645--1791Chr01:37508559..37508583 (25 bp)
ACCGAGAGCGTCAGTCCCACAGGAA
LOC_Os01g64020
Os.25548.1.A1_x_at--502--951Chr01:37508539..37508563 (25 bp)
AGGAACCGAGCTGCAACCGATGCAT
LOC_Os01g64020
Os.25548.1.A1_x_at--1087--3071Chr01:37508514..37508538 (25 bp)
AATCAGCCTCAGCAGAATCAGTACT
LOC_Os01g64020
Os.25548.1.A1_x_at--432--171Chr01:37508485..37508509 (25 bp)
ATTTTGAGAGCTTCTCCTGGAGGAT
LOC_Os01g64020
Os.25548.1.A1_x_at--520--7031Chr01:37508460..37508484 (25 bp)
GTAAACTCCGGCCAAAAGTGATGTT
LOC_Os01g64020
Target Sequence 
GGGATCTACAGCCTGCAGCAGTCGTCGGAGCAGGCGGAGGAGGCGCTCGCGCAGGGGCTGCAGCAGCTGCACCAGTCGCT
CGCCGACACCGTCGCCGCCGGCACGCTCAACGACGGCCCCGGCGTGCCCAACTACATGAGCCTCATGGCCATCGCCCTGG
ACAAGCTCGCCAGCCTCGAAAGCTTCTACCAGCAGGCTGACAATCTGAGGCAACAAACGTTGCATCAGCTGCGGCGGATT
CTAACAACCCGGCAGGCGGCTCGGTGTTTCCTCTCCATTGGGGAGTATTACCGCCGCCTCCGTGCTCTCAGCAACCTCTG
GTCTTCACGTCCTCGCGAGAACTTCATTGGCACCGAGAGCGTCAGTCCCACAGGAACCGAGCTGCAACCGATGCATAATC
AGCCTCAGCAGAATCAGTACTCAGGATTTTGAGAGCTTCTCCTGGAGGATGTAAACTCCGGCCAAAAGTGATGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.25548.1.A1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis