Browse Element(s) Details


Os.10541.1.S1_at

Description gb:AK070998.1
DB_XREF= gi:32981021
TID=Os.10541.1
CNT=11
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.10541 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative abscisic acid insensitive 5 (P0489B03.8), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023078J23, full insert sequence.
FL= gb:AK070998.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6400011/11ABA response element binding factor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g63990Os.6375.2.S1_x_at11/111+37481297..37484299hydrolase, alpha/beta fold family protein, expressed
LOC_Os01g63990Os.6375.1.S1_s_at11/111+37481297..37484299hydrolase, alpha/beta fold family protein, expressed
LOC_Os01g64000Os.10541.1.S1_at11/111+37501402..37503251ABA response element binding factor, putative, expressed
LOC_Os01g64010Os.5366.1.S2_at11/111+37504302..37511595Dual specificity phosphatase, catalytic domain containing protein, expressed
LOC_Os01g64010Os.5366.2.S1_at11/111+37504302..37511595Dual specificity phosphatase, catalytic domain containing protein, expressed
LOC_Os01g64010Os.5366.1.S1_a_at11/111+37504302..37511595Dual specificity phosphatase, catalytic domain containing protein, expressed
LOC_Os01g64010Os.5366.3.S1_x_at11/111+37504302..37511595Dual specificity phosphatase, catalytic domain containing protein, expressed
LOC_Os01g64020Os.42388.1.S1_x_at11/111+37508354..37515429Transcription factor HBP-1b, putative, expressed
LOC_Os01g64020Os.25548.1.A1_at11/111+37508354..37515429Transcription factor HBP-1b, putative, expressed
LOC_Os01g64020Os.42388.1.S1_at11/111+37508354..37515429Transcription factor HBP-1b, putative, expressed
LOC_Os01g64020OsAffx.23909.1.S1_at11/111+37508354..37515429Transcription factor HBP-1b, putative, expressed
LOC_Os01g64020Os.25548.1.A1_x_at11/111+37508354..37515429Transcription factor HBP-1b, putative, expressed
LOC_Os01g64020Os.52227.1.S1_at1/111+37508354..37515429Transcription factor HBP-1b, putative, expressed
LOC_Os01g64030Os.26365.1.S1_at11/111+37517284..37524641F-box family protein, putative, expressed
LOC_Os01g64030Os.19541.1.S1_at1/111+37517284..37524641F-box family protein, putative, expressed
LOC_Os01g64030Os.5606.1.S1_at1/111+37517284..37524641F-box family protein, putative, expressed
LOC_Os01g64040NANA1+37525182..37525692expressed protein
LOC_Os01g64050NANA1+37528099..37531259hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0006950biological_processresponse to stress
GO:0009414biological_processresponse to water deprivation
GO:0009651biological_processresponse to salt stress
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0009738biological_processabscisic acid mediated signaling
GO:0010182biological_processsugar mediated signaling
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0016563molecular_functiontranscriptional activator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10541.1.S1_at--825--6451Chr01:37502365..37502389 (25 bp)
GATCAAGAACCGTGAGTCAGCTGCA
LOC_Os01g64000
Os.10541.1.S1_at--206--1931Chr01:37502389..37502411 (23 bp)
ACGGTCCCGTGCTAGAAAGCAGGCT
LOC_Os01g64000
Os.10541.1.S1_at--1060--2311Chr01:37502496..37502516 (21 bp)
AAAGCAGGCTTATACGGTGGAGCTC
LOC_Os01g64000
Os.10541.1.S1_at--361--1611Chr01:37502944..37502968 (25 bp)
AGCTGCATGTGGTGAAACGGGCATA
LOC_Os01g64000
Os.10541.1.S1_at--196--7771Chr01:37502971..37502995 (25 bp)
GGTGACCGGCGAGTGGCACACTCAT
LOC_Os01g64000
Os.10541.1.S1_at--417--3331Chr01:37502989..37503013 (25 bp)
CACTCATCCTGCTTCTGGTGTGGCA
LOC_Os01g64000
Os.10541.1.S1_at--1112--8611Chr01:37503004..37503028 (25 bp)
TGGTGTGGCACTAGCCTCTGAGGCT
LOC_Os01g64000
Os.10541.1.S1_at--467--7931Chr01:37503036..37503060 (25 bp)
GGATTTGCACATTAAGTCTTCTTTC
LOC_Os01g64000
Os.10541.1.S1_at--646--7391Chr01:37503112..37503136 (25 bp)
GTGATGCTTGTAAACCTGCCTGGAC
LOC_Os01g64000
Os.10541.1.S1_at--4--771Chr01:37503141..37503165 (25 bp)
ATGTCTTGCCATCGTGTTCACCGGT
LOC_Os01g64000
Os.10541.1.S1_at--96--7271Chr01:37503164..37503188 (25 bp)
GTCCTTGCTGCTTATATGGTTACAT
LOC_Os01g64000
Target Sequence 
GATCAAGAACCGTGAGTCAGCTGCACGGTCCCGTGCTAGAAAGCAGGCTTATACGGTGGAGCTCGAAGCTGAACTGAACT
ATCTCAAGCAGGAGAACGCTCGTCTCAAAGAGGCAGAGAAGACGGTTCTACTGACAAAGAAGCAAATGCTGGTTGAGAAA
ATGATGGAGCAGTCCAAGGAGAAGATGAATGCAAATAGGGGTGGCAGCCAGCTGCGCCGCAGCGGCAGCTGCATGTGGTG
AAACGGGCATAGCGGTGACCGGCGAGTGGCACACTCATCCTGCTTCTGGTGTGGCACTAGCCTCTGAGGCTCTGAAGAGG
ATTTGCACATTAAGTCTTCTTTCAGACTAAGTGATGTGAAGGTATTATGGTAGTAGTTGATATACATATATGCTGTGATG
CTTGTAAACCTGCCTGGACCCACATGTCTTGCCATCGTGTTCACCGGTCCTTGCTGCTTATATGGTTACAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10541.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis