Browse Element(s) Details


Os.5366.1.S1_a_at

Description gb:AK072832.1
DB_XREF= gi:32982855
TID=Os.5366.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.5366 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0489B03.9 (P0489B03.9), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023140D10, full insert sequence.
FL= gb:AK072832.1 gb:AK101903.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6401011/11Dual specificity phosphatase, catalytic domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g63990Os.6375.2.S1_x_at11/111+37481297..37484299hydrolase, alpha/beta fold family protein, expressed
LOC_Os01g63990Os.6375.1.S1_s_at11/111+37481297..37484299hydrolase, alpha/beta fold family protein, expressed
LOC_Os01g64000Os.10541.1.S1_at11/111+37501402..37503251ABA response element binding factor, putative, expressed
LOC_Os01g64010Os.5366.1.S2_at11/111+37504302..37511595Dual specificity phosphatase, catalytic domain containing protein, expressed
LOC_Os01g64010Os.5366.2.S1_at11/111+37504302..37511595Dual specificity phosphatase, catalytic domain containing protein, expressed
LOC_Os01g64010Os.5366.1.S1_a_at11/111+37504302..37511595Dual specificity phosphatase, catalytic domain containing protein, expressed
LOC_Os01g64010Os.5366.3.S1_x_at11/111+37504302..37511595Dual specificity phosphatase, catalytic domain containing protein, expressed
LOC_Os01g64020Os.42388.1.S1_x_at11/111+37508354..37515429Transcription factor HBP-1b, putative, expressed
LOC_Os01g64020Os.25548.1.A1_at11/111+37508354..37515429Transcription factor HBP-1b, putative, expressed
LOC_Os01g64020Os.42388.1.S1_at11/111+37508354..37515429Transcription factor HBP-1b, putative, expressed
LOC_Os01g64020OsAffx.23909.1.S1_at11/111+37508354..37515429Transcription factor HBP-1b, putative, expressed
LOC_Os01g64020Os.25548.1.A1_x_at11/111+37508354..37515429Transcription factor HBP-1b, putative, expressed
LOC_Os01g64020Os.52227.1.S1_at1/111+37508354..37515429Transcription factor HBP-1b, putative, expressed
LOC_Os01g64030Os.26365.1.S1_at11/111+37517284..37524641F-box family protein, putative, expressed
LOC_Os01g64030Os.19541.1.S1_at1/111+37517284..37524641F-box family protein, putative, expressed
LOC_Os01g64030Os.5606.1.S1_at1/111+37517284..37524641F-box family protein, putative, expressed
LOC_Os01g64040NANA1+37525182..37525692expressed protein
LOC_Os01g64050NANA1+37528099..37531259hypothetical protein
LOC_Os01g64060NANA1+37531704..37532972retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5366.1.S1_a_at--500--611Chr01:37506264..37506288 (25 bp)
ATGCGATTCTTTCGGATCATACCCG
LOC_Os01g64010
Os.5366.1.S1_a_at--726--2391Chr01:37506312..37506336 (25 bp)
AAACTAACTTGCTCAGTGGCTGTGA
LOC_Os01g64010
Os.5366.1.S1_a_at--434--631Chr01:37506356..37506380 (25 bp)
ATGCTCTGGCATTATCTACTGTTAT
LOC_Os01g64010
Os.5366.1.S1_a_at--6--9931Chr01:37506372..37506396 (25 bp)
TACTGTTATCCTAGTCATGTCCAAG
LOC_Os01g64010
Os.5366.1.S1_a_at--894--8691Chr01:37506389..37506413 (25 bp)
TGTCCAAGGCATTTCATTCTCTAAG
LOC_Os01g64010
Os.5366.1.S1_a_at--583--2391Chr01:37506438..37506462 (25 bp)
AAACTTCTACTACTGTGGCTTACAA
LOC_Os01g64010
Os.5366.1.S1_a_at--807--8291Chr01:37506454..37506478 (25 bp)
GGCTTACAACGCCAGCTCTTTTAGG
LOC_Os01g64010
Os.5366.1.S1_a_at--35--3751Chr01:37506469..37506493 (25 bp)
CTCTTTTAGGCGCTCTGTTGGCTGC
LOC_Os01g64010
Os.5366.1.S1_a_at--367--3951Chr01:37506493..37506517 (25 bp)
CGTTTGTTGCCCTGACTTGGGATTA
LOC_Os01g64010
Os.5366.1.S1_a_at--154--5552Chr01:37506560..37506584 (25 bp)
GAAACTGCTAGGTCTCGGTTTATGA
LOC_Os01g64010
Os.5366.1.S1_a_at--206--8091Chr01:37506590..37506614 (25 bp)
GGACCAGTTTTGTACCGCATTGACC
LOC_Os01g64010
Target Sequence 
ATGCGATTCTTTCGGATCATACCCGAAAAAGGCATTGATCTCGCAAGAAAACTAACTTGCTCAGTGGCTGTGATAATTGA
GATGAAGTTTAAATGCTCTGGCATTATCTACTGTTATCCTAGTCATGTCCAAGGCATTTCATTCTCTAAGTTAATTGTTT
GGGAGTATGTTGTAAAACTTCTACTACTGTGGCTTACAACGCCAGCTCTTTTAGGCGCTCTGTTGGCTGCGTTTGTTGCC
CTGACTTGGGATTAGGGTTCACAGATGGAATTTCGCGAAAACCAATCGGATTTCTTGAAACTGCTAGGTCTCGGTTTATG
AAAACCGGACCAGTTTTGTACCGCATTGACC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5366.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis