Browse Element(s) Details


Os.6375.2.S1_x_at

Description gb:CB667923
DB_XREF= gi:29671648
DB_XREF=OSJNEd15H24.r
CLONE=OSJNEd15H24
TID=Os.6375.2
CNT=18
FEA=FLmRNA
TIER=Stack
STK=9
UG=Os.6375 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0683F02.22 (P0683F02.22), mRNA
FL= gb:AK072912.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6399011/11hydrolase, alpha/beta fold family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g63960OsAffx.10048.1.S1_x_at11/111+37455270..37459619retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g63970Os.31344.1.S1_at11/111+37460552..37462168sialyltransferase, putative, expressed
LOC_Os01g63980Os.36152.1.S1_at11/111+37473768..37475968Zinc finger, C2H2 type family protein, expressed
LOC_Os01g63980OsAffx.17417.2.S1_x_at2/111+37473768..37475968Zinc finger, C2H2 type family protein, expressed
LOC_Os01g63980OsAffx.17417.1.S1_x_at1/111+37473768..37475968Zinc finger, C2H2 type family protein, expressed
LOC_Os01g63980OsAffx.29835.1.S1_x_at1/111+37473768..37475968Zinc finger, C2H2 type family protein, expressed
LOC_Os01g63990Os.6375.2.S1_x_at11/111+37481297..37484299hydrolase, alpha/beta fold family protein, expressed
LOC_Os01g63990Os.6375.1.S1_s_at11/111+37481297..37484299hydrolase, alpha/beta fold family protein, expressed
LOC_Os01g64000Os.10541.1.S1_at11/111+37501402..37503251ABA response element binding factor, putative, expressed
LOC_Os01g64010Os.5366.1.S2_at11/111+37504302..37511595Dual specificity phosphatase, catalytic domain containing protein, expressed
LOC_Os01g64010Os.5366.2.S1_at11/111+37504302..37511595Dual specificity phosphatase, catalytic domain containing protein, expressed
LOC_Os01g64010Os.5366.1.S1_a_at11/111+37504302..37511595Dual specificity phosphatase, catalytic domain containing protein, expressed
LOC_Os01g64010Os.5366.3.S1_x_at11/111+37504302..37511595Dual specificity phosphatase, catalytic domain containing protein, expressed
LOC_Os01g64020Os.42388.1.S1_x_at11/111+37508354..37515429Transcription factor HBP-1b, putative, expressed
LOC_Os01g64020Os.25548.1.A1_at11/111+37508354..37515429Transcription factor HBP-1b, putative, expressed
LOC_Os01g64020Os.42388.1.S1_at11/111+37508354..37515429Transcription factor HBP-1b, putative, expressed
LOC_Os01g64020OsAffx.23909.1.S1_at11/111+37508354..37515429Transcription factor HBP-1b, putative, expressed
LOC_Os01g64020Os.25548.1.A1_x_at11/111+37508354..37515429Transcription factor HBP-1b, putative, expressed
LOC_Os01g64020Os.52227.1.S1_at1/111+37508354..37515429Transcription factor HBP-1b, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003824molecular_functioncatalytic activity
GO:0016787molecular_functionhydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6375.2.S1_x_at--412--3871Chr01:37483413..37483437 (25 bp)
CTGTTCTACGCCTGGTTCAATCAAA
LOC_Os01g63990
Os.6375.2.S1_x_at--739--2311Chr01:37483436..37483460 (25 bp)
AAAGTGGTTCAGGATCTCACCGATC
LOC_Os01g63990
Os.6375.2.S1_x_at--1061--5411Chr01:37483469..37483493 (25 bp)
GAAGCCCGAGGCTTTCACTGAAAAG
LOC_Os01g63990
Os.6375.2.S1_x_at--823--1951Chr01:37483495..37483519 (25 bp)
ACTGGGAGATCCTAGCTGAGATTCA
LOC_Os01g63990
Os.6375.2.S1_x_at--835--5391Chr01:37483700..37483724 (25 bp)
GAAGCAGGGAGCCTACCACTCGCTG
LOC_Os01g63990
Os.6375.2.S1_x_at--205--9411Chr01:37483807..37483831 (25 bp)
TCGTCAGCATCTGGCAAGGGCGCGA
LOC_Os01g63990
Os.6375.2.S1_x_at--720--4591Chr01:37483945..37483969 (25 bp)
GCGACAAGATCGTCCGGGAGCTCCT
LOC_Os01g63990
Os.6375.2.S1_x_at--124--8091Chr01:37483979..37484003 (25 bp)
GGAGCCGCGAGATTTGTAGACAGAT
LOC_Os01g63990
Os.6375.2.S1_x_at--676--5651Chr01:37483997..37484021 (25 bp)
GACAGATCGAGTTCGTGTCCTGTTT
LOC_Os01g63990
Os.6375.2.S1_x_at--440--8711Chr01:37484012..37484036 (25 bp)
TGTCCTGTTTCGCTACACAGAGAGG
LOC_Os01g63990
Os.6375.2.S1_x_at--1102--5211Chr01:37484063..37484087 (25 bp)
GAATATAGGTCCAAGCGGTGCTTGT
LOC_Os01g63990
Target Sequence 
CTGTTCTACGCCTGGTTCAATCAAAAGTGGTTCAGGATCTCACCGATCGTGGAGGGGAAGCCCGAGGCTTTCACTGAAAA
GGACTGGGAGATCCTAGCTGAGATTCAGAGAACTGGCCAATTGGACAGGGGGAGGGCGACGAAGCAGGGAGCCTACCACT
CGCTGTGCCGCGACGCGACGATCCTGTTCGGGGCGTGGGAGTTCGACCCGACGGCGATCGAGAACCCGTTCCCCAACGGG
GACGGCGTCGTCAGCATCTGGCAAGGGCGCGAGGACAAGATCGTGCGGGTGGAGGCGCAGCGCTACGTGGCGGAGAAGCT
CCCGTGGGTACGGTACCACGAGCACCCCGAGGGCGGCCACCTCTTCATGTGCGCCGACGGGTTGGGCGACAAGATCGTCC
GGGAGCTCCTGCTCGGCGAGGAGCCGCGAGATTTGTAGACAGATCGAGTTCGTGTCCTGTTTCGCTACACAGAGAGGGGA
ACACAAACTCACAGATTGGGGAGGAATATAGGTCCAAGCGGTGCTTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6375.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis