Browse Element(s) Details


OsAffx.29835.1.S1_x_at

Description tigr:9637.m01099
TID=OsAffx.29835.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to WIP1 protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g1368011/11Zinc finger, C2H2 type family protein
LOC_Os09g109803/11zinc finger protein, putative, expressed
LOC_Os05g371902/11Zinc finger, C2H2 type family protein, expressed
LOC_Os06g409602/11Zinc finger, C2H2 type family protein, expressed
LOC_Os05g515001/11Elongation factor Tu GTP binding domain containing protein, expressed
LOC_Os08g393901/11Zinc finger, C2H2 type family protein, expressed
LOC_Os09g311501/11TRANSPARENT TESTA 1 protein, putative, expressed
LOC_Os02g102401/11expressed protein
LOC_Os01g639801/11Zinc finger, C2H2 type family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g13660Os.47463.1.S1_x_at5/119+7980380..7984076transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g13660Os.14491.2.S1_x_at4/119+7980380..7984076transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g13670NANA9+7986786..7990118transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g13680OsAffx.29835.1.S1_x_at11/119+7994738..7995963Zinc finger, C2H2 type family protein
LOC_Os09g13690NANA9+8004605..8007896retrotransposon protein, putative, unclassified
LOC_Os09g13700NANA9+8008496..8014633retrotransposon protein, putative, unclassified
LOC_Os09g13710NANA9+8018824..8024382retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0006413biological_processtranslational initiation
GO:0009813biological_processflavonoid biosynthesis
GO:0045449biological_processregulation of transcription
GO:0005634cellular_componentnucleus
GO:0003676molecular_functionnucleic acid binding
GO:0003700molecular_functiontranscription factor activity
GO:0003743molecular_functiontranslation initiation factor activity
GO:0008135molecular_functiontranslation factor activity, nucleic acid binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29835.1.S1_x_at--405--9471Chr09:7995312..7995336 (25 bp)
TCTGCAACAAGACCTTCAACCGCTT
LOC_Os09g13680
OsAffx.29835.1.S1_x_at--525--2451Chr09:7995317..7995341 (25 bp)
AACAAGACCTTCAACCGCTTCAACA
LOC_Os09g13680
OsAffx.29835.1.S1_x_at--601--9831Chr09:7995445..7995469 (25 bp)
TACAGGAAAGGGTCGGAGTCGCTGA
LOC_Os09g13680
OsAffx.29835.1.S1_x_at--31--9351Chr09:7995508..7995532 (25 bp)
TCGCTGATGCGGCTGCCGTGCTACT
LOC_Os09g13680
OsAffx.29835.1.S1_x_at--929--7772Chr09:7995545..7995569 (25 bp)
GGTGCCGGAACAACGTGGAGCACCC
LOC_Os09g13680
OsAffx.29835.1.S1_x_at--100--8171Chr09:7995551..7995575 (25 bp)
GGAACAACGTGGAGCACCCGCGCGC
LOC_Os09g13680
OsAffx.29835.1.S1_x_at--505--5737Chr09:18737979..18738003 (25 bp)
GACTGGCGCACCCACGAGAAGAACT
LOC_Os09g31150
OsAffx.29835.1.S1_x_at--692--1431Chr09:7995701..7995725 (25 bp)
AGAACTGCGGCAAGCTCTGGTTCTG
LOC_Os09g13680
OsAffx.29835.1.S1_x_at--840--9135Chr09:7995730..7995754 (25 bp)
TGCGGCTCCGACTTCAAGCACAAGC
LOC_Os09g13680
OsAffx.29835.1.S1_x_at--72--4571Chr09:7995854..7995878 (25 bp)
GCGCCGGCGCTGATGACGATGACGA
LOC_Os09g13680
OsAffx.29835.1.S1_x_at--32--8952Chr09:7995873..7995897 (25 bp)
TGACGATGAGTACTACGACGACGAC
LOC_Os09g13680
Target Sequence 
TCTGCAACAAGACCTTCAACCGCTTCAACAACATGCAGATGCACATGTGGGGGCATGGGTCGCAGTACAGGAAAGGGTCG
GAGTCGCTGAGGGGGGCGATCACGGTGGGCGGGGCGGCGCCGCCGGCGTCGCTGATGCGGCTGCCGTGCTACTGCTGCGC
GGAGGGGTGCCGGAACAACGTGGAGCACCCGCGCGCCCGCCCGCTCAAGGACTTCCGGACGCTGCAGACGCACTACCGGC
GGAAGCACGGCGCCCGCCCCTACGCCTGCCGCCGCTGCGGCAAGCGCTTCGCCGTGCGCGGCGACTGGCGCACCCACGAG
AAGAACTGCGGCAAGCTCTGGTTCTGCGTCTGCGGCTCCGACTTCAAGCACAAGCGCTCCCTCAAGGACCACGTCCGCTC
CTTCGGCGGCGGCCACGCCCCCCACATCGTCGAGTCTTCCTCCACCGGCGCCGGCGGTGGCGGCGGATGCGGCGGCGCCG
GCGCTGATGACGATGACGATGAGTACTACGACGACGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29835.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis