Browse Element(s) Details


Os.36152.1.S1_at

Description gb:AK064334.1
DB_XREF= gi:32974352
TID=Os.36152.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.36152 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0683F02.21 (P0683F02.21), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-107-G07, full insert sequence.
FL= gb:AK064334.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6398011/11Zinc finger, C2H2 type family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g63950Os.27631.1.S1_at11/111+37449981..37453698expressed protein
LOC_Os01g63960OsAffx.10048.1.S1_x_at11/111+37455270..37459619retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g63970Os.31344.1.S1_at11/111+37460552..37462168sialyltransferase, putative, expressed
LOC_Os01g63980Os.36152.1.S1_at11/111+37473768..37475968Zinc finger, C2H2 type family protein, expressed
LOC_Os01g63980OsAffx.17417.2.S1_x_at2/111+37473768..37475968Zinc finger, C2H2 type family protein, expressed
LOC_Os01g63980OsAffx.17417.1.S1_x_at1/111+37473768..37475968Zinc finger, C2H2 type family protein, expressed
LOC_Os01g63980OsAffx.29835.1.S1_x_at1/111+37473768..37475968Zinc finger, C2H2 type family protein, expressed
LOC_Os01g63990Os.6375.2.S1_x_at11/111+37481297..37484299hydrolase, alpha/beta fold family protein, expressed
LOC_Os01g63990Os.6375.1.S1_s_at11/111+37481297..37484299hydrolase, alpha/beta fold family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009813biological_processflavonoid biosynthesis
GO:0045449biological_processregulation of transcription
GO:0005634cellular_componentnucleus
GO:0003676molecular_functionnucleic acid binding
GO:0003700molecular_functiontranscription factor activity
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.36152.1.S1_at--644--2771Chr01:37474248..37474272 (25 bp)
AAGACCGCATCATAAGCTTCCAACG
LOC_Os01g63980
Os.36152.1.S1_at--606--10091Chr01:37474175..37474199 (25 bp)
TAGGCTGCAGTTACCTGGTTCGTTA
LOC_Os01g63980
Os.36152.1.S1_at--1000--1971Chr01:37474128..37474152 (25 bp)
ACTGCTGCTCGCGTATATATCTACT
LOC_Os01g63980
Os.36152.1.S1_at--220--7071Chr01:37474101..37474125 (25 bp)
GTAAGTTAACCATGCAATTGTCCAG
LOC_Os01g63980
Os.36152.1.S1_at--1045--9111Chr01:37474024..37474048 (25 bp)
TGCTGATATGTGCATGCATCCGTGG
LOC_Os01g63980
Os.36152.1.S1_at--463--131Chr01:37473958..37473982 (25 bp)
ATTAAGGTGGCTTTCAGCCGGTGCC
LOC_Os01g63980
Os.36152.1.S1_at--915--7771Chr01:37473939..37473963 (25 bp)
GGTGCCGATCGAAAGCTGTGAGCCT
LOC_Os01g63980
Os.36152.1.S1_at--855--10551Chr01:37473898..37473922 (25 bp)
TTCTTCTGCCAGAGTGTGAGCTGTT
LOC_Os01g63980
Os.36152.1.S1_at--1137--4731Chr01:37473879..37473903 (25 bp)
GCTGTTTAGTGAGGCTATGTCCCCA
LOC_Os01g63980
Os.36152.1.S1_at--334--771Chr01:37473863..37473887 (25 bp)
ATGTCCCCAGCTTTGTATCGGAGAA
LOC_Os01g63980
Os.36152.1.S1_at--548--3111Chr01:37473838..37473862 (25 bp)
AATTTCTCAGCTTCACAGGCTAATT
LOC_Os01g63980
Target Sequence 
AAGACCGCATCATAAGCTTCCAACGGTGAGAAATATCGATCGGTCGAGGTCGACGATGATCGATCATGATGTGTAGGCTG
CAGTTACCTGGTTCGTTACTAAGTCTATGTATACGTGAGCACTGCTGCTCGCGTATATATCTACTTAGTAAGTTAACCAT
GCAATTGTCCAGCATATAGACAACAAGTTAATCAAACTATAGCTACTAGCTAGAGAGTAATGTATGCTGATATGTGCATG
CATCCGTGGGGATTTAGGAGGAAATTTAAGCAGACTATTAGCACACAATAATTAAGGTGGCTTTCAGCCGGTGCCGATCG
AAAGCTGTGAGCCTGTGAAGTAGATGAATTTTCTTCTGCCAGAGTGTGAGCTGTTTAGTGAGGCTATGTCCCCAGCTTTG
TATCGGAGAAAATTTCTCAGCTTCACAGGCTAATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.36152.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis