Browse Element(s) Details


OsAffx.17417.2.S1_x_at

Description tigr:9636.m03979
TID=OsAffx.17417.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to WIP1 protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3939011/11Zinc finger, C2H2 type family protein, expressed
LOC_Os01g639802/11Zinc finger, C2H2 type family protein, expressed
LOC_Os05g371902/11Zinc finger, C2H2 type family protein, expressed
LOC_Os09g311502/11TRANSPARENT TESTA 1 protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g39370Os.5210.1.S1_at11/118+24750412..24753503sodium/dicarboxylate cotransporter, putative, expressed
LOC_Os08g39380Os.21874.1.S1_at11/118+24754930..24759033beta-2-xylosyltransferase, putative, expressed
LOC_Os08g39390OsAffx.17417.2.S1_x_at11/118+24772689..24775727Zinc finger, C2H2 type family protein, expressed
LOC_Os08g39390OsAffx.17417.2.S1_at11/118+24772689..24775727Zinc finger, C2H2 type family protein, expressed
LOC_Os08g39390OsAffx.17417.1.S1_x_at3/118+24772689..24775727Zinc finger, C2H2 type family protein, expressed
LOC_Os08g39390OsAffx.29835.1.S1_x_at1/118+24772689..24775727Zinc finger, C2H2 type family protein, expressed
LOC_Os08g39400OsAffx.6084.1.S1_at11/118+24781793..24782206hypothetical protein
LOC_Os08g39410OsAffx.32166.1548.S1_s_at11/118+24784525..24790499retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g39420Os.26047.1.S1_at11/118+24796731..24801938expressed protein
LOC_Os08g39420Os.26047.2.S1_s_at11/118+24796731..24801938expressed protein
LOC_Os08g39420Os.26047.1.S1_x_at11/118+24796731..24801938expressed protein
LOC_Os08g39420Os.26047.2.S1_at4/118+24796731..24801938expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0009813biological_processflavonoid biosynthesis
GO:0045449biological_processregulation of transcription
GO:0005634cellular_componentnucleus
GO:0003676molecular_functionnucleic acid binding
GO:0003700molecular_functiontranscription factor activity
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17417.2.S1_x_at--1005--9391Chr08:24773409..24773433 (25 bp)
TCGTCGACGCCGATCGGGAAGCTGA
LOC_Os08g39390
OsAffx.17417.2.S1_x_at--90--4171Chr08:24773416..24773440 (25 bp)
CGCCGATCGGGAAGCTGAACAAAGG
LOC_Os08g39390
OsAffx.17417.2.S1_x_at--837--2311Chr08:24773436..24773460 (25 bp)
AAAGGGCAGTACTGGATTCCGACGC
LOC_Os08g39390
OsAffx.17417.2.S1_x_at--822--5011Chr08:24773441..24773465 (25 bp)
GCAGTACTGGATTCCGACGCCATCG
LOC_Os08g39390
OsAffx.17417.2.S1_x_at--1074--4531Chr08:24773497..24773521 (25 bp)
GCCCTGTCTGCTTCAAAACCTTCAA
LOC_Os08g39390
OsAffx.17417.2.S1_x_at--1161--4753Chr08:24775424..24775448 (25 bp)
GCTGCAGACGCACTACAAGCGCAAG
LOC_Os08g39390
OsAffx.17417.2.S1_x_at--1079--5171Chr08:24775474..24775498 (25 bp)
GCAAGTGCGGCAAGGCCTTCGCCGT
LOC_Os08g39390
OsAffx.17417.2.S1_x_at--217--7074Chr09:18737970..18737994 (25 bp)
GTCAAGGGCGACTGGCGCACCCACG
LOC_Os09g31150
OsAffx.17417.2.S1_x_at--660--8592Chr09:18738015..18738039 (25 bp)
TGGTACTGCCTCTGCGGCTCCGAGT
LOC_Os09g31150
OsAffx.17417.2.S1_x_at--1142--8311Chr08:24775557..24775581 (25 bp)
GGCTCCGAGTTCAAGCACAAGCGCT
LOC_Os08g39390
OsAffx.17417.2.S1_x_at--475--7211Chr08:24775671..24775695 (25 bp)
GTCGTCAGACCTTCGTCCTCCATGG
LOC_Os08g39390
Target Sequence 
TCGTCGACGCCGATCGGGAAGCTGAACAAAGGGCAGTACTGGATTCCGACGCCATCGCAGATCCTCATCGGCCCAACCCA
GTTCTCCTGCCCTGTCTGCTTCAAAACCTTCAACAGATACAATAACATGCAGATGCATATGTGGGGGCATGGGTCGCAGT
ACAGGAAGGGGCCGGAGTCGCTGCGCGGGGTGCAGCCGACGGCGATGCTGCGGCTGCCGTGCTACTGCTGCGCGGCGGGG
TGCCGGAACAACATCGACCACCCGCGGGCGCGGCCGCTCAAGGACTTCCGCACGCTGCAGACGCACTACAAGCGCAAGCA
CGGCCTCAAGCCCTTCCTCTGCCGCAAGTGCGGCAAGGCCTTCGCCGTCAAGGGCGACTGGCGCACCCACGAGAAGAACT
GCGGCAAGCTCTGGTACTGCCTCTGCGGCTCCGAGTTCAAGCACAAGCGCTCCCTCAAGGACCACGCCCGCGCCTTCGGC
CACGCCCACACCGCCCTCGACGCCGACGACGACGACGGCGCCGTCTCCGACGCCGACGCCGTCGTCAGACCTTCGTCCTC
CATGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17417.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis